miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16587 3' -48.4 NC_004117.1 + 149018 0.66 0.999521
Target:  5'- cGCgagCAacaauCCuuUGUUGCCGGAACGu--- -3'
miRNA:   3'- -CGa--GU-----GGuuACAACGGCCUUGUuagc -5'
16587 3' -48.4 NC_004117.1 + 30531 0.66 0.999403
Target:  5'- --aCACCGAU-UUGCCGGAAgGGUg- -3'
miRNA:   3'- cgaGUGGUUAcAACGGCCUUgUUAgc -5'
16587 3' -48.4 NC_004117.1 + 46698 0.66 0.999091
Target:  5'- gGUUUACCAuUGUUGCaagaGGcguGCAAUUGc -3'
miRNA:   3'- -CGAGUGGUuACAACGg---CCu--UGUUAGC- -5'
16587 3' -48.4 NC_004117.1 + 96065 0.67 0.998888
Target:  5'- uGCcgCGCCaAGUGUacgacGCCGGcAGCGGUCa -3'
miRNA:   3'- -CGa-GUGG-UUACAa----CGGCC-UUGUUAGc -5'
16587 3' -48.4 NC_004117.1 + 77238 0.67 0.998866
Target:  5'- gGUUCGCUAcucucacGUcGUUGCCGcGGCGGUCGu -3'
miRNA:   3'- -CGAGUGGU-------UA-CAACGGCcUUGUUAGC- -5'
16587 3' -48.4 NC_004117.1 + 67390 0.68 0.996095
Target:  5'- cGCcCAgCAAUcGUucaaUGUCGGAGCAAUCa -3'
miRNA:   3'- -CGaGUgGUUA-CA----ACGGCCUUGUUAGc -5'
16587 3' -48.4 NC_004117.1 + 91268 0.68 0.995419
Target:  5'- -aUUAUCGGUGUaucUGuCCGcGAGCAAUCGg -3'
miRNA:   3'- cgAGUGGUUACA---AC-GGC-CUUGUUAGC- -5'
16587 3' -48.4 NC_004117.1 + 110756 0.68 0.995347
Target:  5'- uGCUCGCUAAcucgggaacagacUuUUGCCGGGcaacgGCGAUCGc -3'
miRNA:   3'- -CGAGUGGUU-------------AcAACGGCCU-----UGUUAGC- -5'
16587 3' -48.4 NC_004117.1 + 44801 0.7 0.983915
Target:  5'- uGUUUACC-AUGUcggccauagcuacUGCCGGAAUuGUCGa -3'
miRNA:   3'- -CGAGUGGuUACA-------------ACGGCCUUGuUAGC- -5'
16587 3' -48.4 NC_004117.1 + 64851 1.03 0.039226
Target:  5'- uGCUCACCAAUGUUGCCGG-ACAAUCGa -3'
miRNA:   3'- -CGAGUGGUUACAACGGCCuUGUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.