miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16587 5' -55.4 NC_004117.1 + 21281 0.66 0.949049
Target:  5'- uUCGUUGGCAgUGuguuCGAUg--GGCGGu -3'
miRNA:   3'- gAGCAGCCGUgGCu---GCUGaaaCCGCU- -5'
16587 5' -55.4 NC_004117.1 + 4662 0.66 0.944755
Target:  5'- aUCGUUGGCAUCuGCGGCacauGCGAc -3'
miRNA:   3'- gAGCAGCCGUGGcUGCUGaaacCGCU- -5'
16587 5' -55.4 NC_004117.1 + 122058 0.66 0.944755
Target:  5'- aCUCGaCGGCGgCGAUGAagaagUGGCu- -3'
miRNA:   3'- -GAGCaGCCGUgGCUGCUgaa--ACCGcu -5'
16587 5' -55.4 NC_004117.1 + 135791 0.66 0.930484
Target:  5'- -aCGaCGGCGCaucaGCGACgaUGGCGAc -3'
miRNA:   3'- gaGCaGCCGUGgc--UGCUGaaACCGCU- -5'
16587 5' -55.4 NC_004117.1 + 32170 0.66 0.925259
Target:  5'- ----cCGGU-CUGGCGugUUUGGCGAu -3'
miRNA:   3'- gagcaGCCGuGGCUGCugAAACCGCU- -5'
16587 5' -55.4 NC_004117.1 + 113082 0.67 0.914107
Target:  5'- gUCGUCGGCuaACUGAcCGAUg--GGCa- -3'
miRNA:   3'- gAGCAGCCG--UGGCU-GCUGaaaCCGcu -5'
16587 5' -55.4 NC_004117.1 + 3663 0.67 0.914107
Target:  5'- aCUCcaCGGCGUCGACGGg--UGGCGAa -3'
miRNA:   3'- -GAGcaGCCGUGGCUGCUgaaACCGCU- -5'
16587 5' -55.4 NC_004117.1 + 61416 0.67 0.908181
Target:  5'- aUCG-CGaUAUCguaGACGACUUUGGCGAa -3'
miRNA:   3'- gAGCaGCcGUGG---CUGCUGAAACCGCU- -5'
16587 5' -55.4 NC_004117.1 + 69052 0.7 0.775697
Target:  5'- gUCGUCGGCGuuGaaacaGCGACaaUUGGCGu -3'
miRNA:   3'- gAGCAGCCGUggC-----UGCUGa-AACCGCu -5'
16587 5' -55.4 NC_004117.1 + 65060 0.71 0.712402
Target:  5'- gUCGUCGGUGCCGACGAguaugauaucgauugUUccggcaacaUUGGUGAg -3'
miRNA:   3'- gAGCAGCCGUGGCUGCU---------------GA---------AACCGCU- -5'
16587 5' -55.4 NC_004117.1 + 42429 0.74 0.587489
Target:  5'- cCUCGUuccgguaaCGGCAUCGACGAagucacgUGGCGGu -3'
miRNA:   3'- -GAGCA--------GCCGUGGCUGCUgaa----ACCGCU- -5'
16587 5' -55.4 NC_004117.1 + 70943 0.75 0.518163
Target:  5'- gUgGUCGaGCGCCGuuGACUUUGGCa- -3'
miRNA:   3'- gAgCAGC-CGUGGCugCUGAAACCGcu -5'
16587 5' -55.4 NC_004117.1 + 136834 0.77 0.425518
Target:  5'- aUCGUUGGUACaaaGGCGAUUUUGuGCGAu -3'
miRNA:   3'- gAGCAGCCGUGg--CUGCUGAAAC-CGCU- -5'
16587 5' -55.4 NC_004117.1 + 64884 1.1 0.003572
Target:  5'- aCUCGUCGGCACCGACGACUUUGGCGAa -3'
miRNA:   3'- -GAGCAGCCGUGGCUGCUGAAACCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.