miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16589 3' -48.4 NC_004117.1 + 67973 0.66 0.999448
Target:  5'- --uGUCGACgaCGCAGCGCGACA-CUa- -3'
miRNA:   3'- gcuUAGUUG--GUGUCGCGUUGUuGAca -5'
16589 3' -48.4 NC_004117.1 + 8301 0.66 0.999314
Target:  5'- aGAGUgCGACCAUAaguGCGCAACucuaucuCUGa -3'
miRNA:   3'- gCUUA-GUUGGUGU---CGCGUUGuu-----GACa -5'
16589 3' -48.4 NC_004117.1 + 146789 0.66 0.999314
Target:  5'- -aAGUCGuCCACGGCaaugguCAGCAGCUGa -3'
miRNA:   3'- gcUUAGUuGGUGUCGc-----GUUGUUGACa -5'
16589 3' -48.4 NC_004117.1 + 120355 0.66 0.998959
Target:  5'- uCGAcgCAauACCACAGgGCGGCGGgUa- -3'
miRNA:   3'- -GCUuaGU--UGGUGUCgCGUUGUUgAca -5'
16589 3' -48.4 NC_004117.1 + 32325 0.67 0.998459
Target:  5'- uCGGG-CGcCCGCAGCGCAuaGAUUGUg -3'
miRNA:   3'- -GCUUaGUuGGUGUCGCGUugUUGACA- -5'
16589 3' -48.4 NC_004117.1 + 72124 0.67 0.997768
Target:  5'- gCGAugcGUCGugCugGuGCGCGACAACa-- -3'
miRNA:   3'- -GCU---UAGUugGugU-CGCGUUGUUGaca -5'
16589 3' -48.4 NC_004117.1 + 96589 0.68 0.994852
Target:  5'- --cGUCGACgGCGugugcguuuuGCGCAACGAUUGUg -3'
miRNA:   3'- gcuUAGUUGgUGU----------CGCGUUGUUGACA- -5'
16589 3' -48.4 NC_004117.1 + 110548 0.69 0.987916
Target:  5'- ---cUCGGCCACAGCGUugcguGCgGACUGa -3'
miRNA:   3'- gcuuAGUUGGUGUCGCGu----UG-UUGACa -5'
16589 3' -48.4 NC_004117.1 + 6155 0.7 0.984444
Target:  5'- aCGAAcUCGACgcuaGCGGagGCAGCAGCUGUu -3'
miRNA:   3'- -GCUU-AGUUGg---UGUCg-CGUUGUUGACA- -5'
16589 3' -48.4 NC_004117.1 + 3656 0.7 0.982447
Target:  5'- uGAGUUAAcuCCACGGCGuCGACGGgUGg -3'
miRNA:   3'- gCUUAGUU--GGUGUCGC-GUUGUUgACa -5'
16589 3' -48.4 NC_004117.1 + 23587 0.7 0.980263
Target:  5'- uGAcGUCGGCCACuuGCGCGcccaACGGCUGc -3'
miRNA:   3'- gCU-UAGUUGGUGu-CGCGU----UGUUGACa -5'
16589 3' -48.4 NC_004117.1 + 33891 0.7 0.97957
Target:  5'- ---uUCAGCCACAGCGUAucccgaugaaauuuGCAccACUGg -3'
miRNA:   3'- gcuuAGUUGGUGUCGCGU--------------UGU--UGACa -5'
16589 3' -48.4 NC_004117.1 + 114033 0.7 0.977882
Target:  5'- cCGuuuGUCGguguGCCACAGUGUAACGuCUGUu -3'
miRNA:   3'- -GCu--UAGU----UGGUGUCGCGUUGUuGACA- -5'
16589 3' -48.4 NC_004117.1 + 80040 0.72 0.946288
Target:  5'- aCGAcUCGGCCGCGGCGCgAGCAGu--- -3'
miRNA:   3'- -GCUuAGUUGGUGUCGCG-UUGUUgaca -5'
16589 3' -48.4 NC_004117.1 + 71976 0.74 0.900784
Target:  5'- cCGAGUCAuggcCCAUAGCGguGCAugcaaACUGUu -3'
miRNA:   3'- -GCUUAGUu---GGUGUCGCguUGU-----UGACA- -5'
16589 3' -48.4 NC_004117.1 + 104253 0.75 0.855765
Target:  5'- aCGGuGUCAGCCu--GCGCAACGAUUGUg -3'
miRNA:   3'- -GCU-UAGUUGGuguCGCGUUGUUGACA- -5'
16589 3' -48.4 NC_004117.1 + 92700 1.09 0.015364
Target:  5'- uCGAAUCAACCACAGCGCAACAACUGUa -3'
miRNA:   3'- -GCUUAGUUGGUGUCGCGUUGUUGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.