Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16589 | 3' | -48.4 | NC_004117.1 | + | 92700 | 1.09 | 0.015364 |
Target: 5'- uCGAAUCAACCACAGCGCAACAACUGUa -3' miRNA: 3'- -GCUUAGUUGGUGUCGCGUUGUUGACA- -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 104253 | 0.75 | 0.855765 |
Target: 5'- aCGGuGUCAGCCu--GCGCAACGAUUGUg -3' miRNA: 3'- -GCU-UAGUUGGuguCGCGUUGUUGACA- -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 71976 | 0.74 | 0.900784 |
Target: 5'- cCGAGUCAuggcCCAUAGCGguGCAugcaaACUGUu -3' miRNA: 3'- -GCUUAGUu---GGUGUCGCguUGU-----UGACA- -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 80040 | 0.72 | 0.946288 |
Target: 5'- aCGAcUCGGCCGCGGCGCgAGCAGu--- -3' miRNA: 3'- -GCUuAGUUGGUGUCGCG-UUGUUgaca -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 114033 | 0.7 | 0.977882 |
Target: 5'- cCGuuuGUCGguguGCCACAGUGUAACGuCUGUu -3' miRNA: 3'- -GCu--UAGU----UGGUGUCGCGUUGUuGACA- -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 33891 | 0.7 | 0.97957 |
Target: 5'- ---uUCAGCCACAGCGUAucccgaugaaauuuGCAccACUGg -3' miRNA: 3'- gcuuAGUUGGUGUCGCGU--------------UGU--UGACa -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 23587 | 0.7 | 0.980263 |
Target: 5'- uGAcGUCGGCCACuuGCGCGcccaACGGCUGc -3' miRNA: 3'- gCU-UAGUUGGUGu-CGCGU----UGUUGACa -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 3656 | 0.7 | 0.982447 |
Target: 5'- uGAGUUAAcuCCACGGCGuCGACGGgUGg -3' miRNA: 3'- gCUUAGUU--GGUGUCGC-GUUGUUgACa -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 6155 | 0.7 | 0.984444 |
Target: 5'- aCGAAcUCGACgcuaGCGGagGCAGCAGCUGUu -3' miRNA: 3'- -GCUU-AGUUGg---UGUCg-CGUUGUUGACA- -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 110548 | 0.69 | 0.987916 |
Target: 5'- ---cUCGGCCACAGCGUugcguGCgGACUGa -3' miRNA: 3'- gcuuAGUUGGUGUCGCGu----UG-UUGACa -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 96589 | 0.68 | 0.994852 |
Target: 5'- --cGUCGACgGCGugugcguuuuGCGCAACGAUUGUg -3' miRNA: 3'- gcuUAGUUGgUGU----------CGCGUUGUUGACA- -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 72124 | 0.67 | 0.997768 |
Target: 5'- gCGAugcGUCGugCugGuGCGCGACAACa-- -3' miRNA: 3'- -GCU---UAGUugGugU-CGCGUUGUUGaca -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 32325 | 0.67 | 0.998459 |
Target: 5'- uCGGG-CGcCCGCAGCGCAuaGAUUGUg -3' miRNA: 3'- -GCUUaGUuGGUGUCGCGUugUUGACA- -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 120355 | 0.66 | 0.998959 |
Target: 5'- uCGAcgCAauACCACAGgGCGGCGGgUa- -3' miRNA: 3'- -GCUuaGU--UGGUGUCgCGUUGUUgAca -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 8301 | 0.66 | 0.999314 |
Target: 5'- aGAGUgCGACCAUAaguGCGCAACucuaucuCUGa -3' miRNA: 3'- gCUUA-GUUGGUGU---CGCGUUGuu-----GACa -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 146789 | 0.66 | 0.999314 |
Target: 5'- -aAGUCGuCCACGGCaaugguCAGCAGCUGa -3' miRNA: 3'- gcUUAGUuGGUGUCGc-----GUUGUUGACa -5' |
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16589 | 3' | -48.4 | NC_004117.1 | + | 67973 | 0.66 | 0.999448 |
Target: 5'- --uGUCGACgaCGCAGCGCGACA-CUa- -3' miRNA: 3'- gcuUAGUUG--GUGUCGCGUUGUuGAca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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