miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16589 5' -52.8 NC_004117.1 + 155414 0.66 0.976024
Target:  5'- cUGACGCaacUGgCGCACaUACGGCAAa- -3'
miRNA:   3'- -ACUGUGc--ACaGCGUGgAUGCCGUUag -5'
16589 5' -52.8 NC_004117.1 + 33549 0.66 0.97338
Target:  5'- gGACugGUG-CGCAUg-AUGaGCGAUCa -3'
miRNA:   3'- aCUGugCACaGCGUGgaUGC-CGUUAG- -5'
16589 5' -52.8 NC_004117.1 + 4859 0.66 0.97338
Target:  5'- uUGACAaacguUGUGUCGCAUgUGCcGCAGa- -3'
miRNA:   3'- -ACUGU-----GCACAGCGUGgAUGcCGUUag -5'
16589 5' -52.8 NC_004117.1 + 3675 0.67 0.96747
Target:  5'- cGACGgGUGgCGaaaCUACGGCAGUg -3'
miRNA:   3'- aCUGUgCACaGCgugGAUGCCGUUAg -5'
16589 5' -52.8 NC_004117.1 + 96788 0.67 0.958475
Target:  5'- cGAUGCGaaccUGUCGCGCCaUGuuucggucgugccccCGGCAAUUa -3'
miRNA:   3'- aCUGUGC----ACAGCGUGG-AU---------------GCCGUUAG- -5'
16589 5' -52.8 NC_004117.1 + 34710 0.67 0.956954
Target:  5'- gUGAauCAUGUGUCGCAauu-CGcGCAAUCg -3'
miRNA:   3'- -ACU--GUGCACAGCGUggauGC-CGUUAG- -5'
16589 5' -52.8 NC_004117.1 + 80975 0.67 0.952985
Target:  5'- aGugGCGUcgGUgGCGCuuaCUACGGCAAa- -3'
miRNA:   3'- aCugUGCA--CAgCGUG---GAUGCCGUUag -5'
16589 5' -52.8 NC_004117.1 + 84605 0.68 0.929495
Target:  5'- cGACACGcaucuuucGUCGUugUUuuGGCGAUCg -3'
miRNA:   3'- aCUGUGCa-------CAGCGugGAugCCGUUAG- -5'
16589 5' -52.8 NC_004117.1 + 17693 0.68 0.924052
Target:  5'- aGAuCACGUGUCGUA---ACGGCcAUCa -3'
miRNA:   3'- aCU-GUGCACAGCGUggaUGCCGuUAG- -5'
16589 5' -52.8 NC_004117.1 + 29560 0.69 0.91836
Target:  5'- cGAUAacaGUuUCGCacGCCUACGGCAAa- -3'
miRNA:   3'- aCUGUg--CAcAGCG--UGGAUGCCGUUag -5'
16589 5' -52.8 NC_004117.1 + 77000 0.69 0.912419
Target:  5'- -cACACGUuUCGCACCUcuaauuCGGCAGc- -3'
miRNA:   3'- acUGUGCAcAGCGUGGAu-----GCCGUUag -5'
16589 5' -52.8 NC_004117.1 + 12421 0.7 0.886205
Target:  5'- cGGCGCGUGUaggcUGCACuCUAaGGCAuUCu -3'
miRNA:   3'- aCUGUGCACA----GCGUG-GAUgCCGUuAG- -5'
16589 5' -52.8 NC_004117.1 + 39657 0.7 0.886205
Target:  5'- cGGCACGU-UCGCACUcuUGGCAAguUCg -3'
miRNA:   3'- aCUGUGCAcAGCGUGGauGCCGUU--AG- -5'
16589 5' -52.8 NC_004117.1 + 19061 0.71 0.839977
Target:  5'- cGGUACGUGUUGCGCaagcaacgccuCUACGGCAcgAUCc -3'
miRNA:   3'- aCUGUGCACAGCGUG-----------GAUGCCGU--UAG- -5'
16589 5' -52.8 NC_004117.1 + 92749 1.09 0.005684
Target:  5'- uUGACACGUGUCGCACCUACGGCAAUCc -3'
miRNA:   3'- -ACUGUGCACAGCGUGGAUGCCGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.