miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1659 3' -63.3 NC_001347.2 + 158591 0.66 0.749711
Target:  5'- aCGGGCAcgGCCUGCUGUgcgCGcGCUgucagACGGg -3'
miRNA:   3'- gGCCCGU--UGGGCGGCG---GC-CGA-----UGCCg -5'
1659 3' -63.3 NC_001347.2 + 172153 0.66 0.749711
Target:  5'- -gGGGCGugaCGCCGUCagugugGGCUucgcGCGGCa -3'
miRNA:   3'- ggCCCGUuggGCGGCGG------CCGA----UGCCG- -5'
1659 3' -63.3 NC_001347.2 + 203314 0.66 0.749711
Target:  5'- uUCGGGCucgccGGCCCuugcGCCGCUuGGCUuucuACGcGCc -3'
miRNA:   3'- -GGCCCG-----UUGGG----CGGCGG-CCGA----UGC-CG- -5'
1659 3' -63.3 NC_001347.2 + 196152 0.66 0.749711
Target:  5'- gCC-GGCGGCCCuguGCCGCgGGUUGCc-- -3'
miRNA:   3'- -GGcCCGUUGGG---CGGCGgCCGAUGccg -5'
1659 3' -63.3 NC_001347.2 + 37912 0.66 0.749711
Target:  5'- cCCGuGCGGCUCGgCGCCcacaGC-GCGGCg -3'
miRNA:   3'- -GGCcCGUUGGGCgGCGGc---CGaUGCCG- -5'
1659 3' -63.3 NC_001347.2 + 41156 0.66 0.749711
Target:  5'- cCCGcGCGgaaAUCCGCCG-CGGCggUGGCg -3'
miRNA:   3'- -GGCcCGU---UGGGCGGCgGCCGauGCCG- -5'
1659 3' -63.3 NC_001347.2 + 208029 0.66 0.740835
Target:  5'- gUGGGCGAUgggaCCGaCGUCGGagucGCGGCg -3'
miRNA:   3'- gGCCCGUUG----GGCgGCGGCCga--UGCCG- -5'
1659 3' -63.3 NC_001347.2 + 182124 0.66 0.740835
Target:  5'- gCGGGUcuucGACgUCGCUGCCGuaGCUAgugcuCGGCa -3'
miRNA:   3'- gGCCCG----UUG-GGCGGCGGC--CGAU-----GCCG- -5'
1659 3' -63.3 NC_001347.2 + 75452 0.66 0.740835
Target:  5'- gUCGGGCAGCUcaaCGCgCGCCaGCUcAC-GCa -3'
miRNA:   3'- -GGCCCGUUGG---GCG-GCGGcCGA-UGcCG- -5'
1659 3' -63.3 NC_001347.2 + 93215 0.66 0.740835
Target:  5'- gCuGGCGacgaGCUCGCUGagCGGCaGCGGCg -3'
miRNA:   3'- gGcCCGU----UGGGCGGCg-GCCGaUGCCG- -5'
1659 3' -63.3 NC_001347.2 + 5578 0.66 0.740835
Target:  5'- -gGGGCGugcCCCGCagaccCCGGUuaaUGCGGUg -3'
miRNA:   3'- ggCCCGUu--GGGCGgc---GGCCG---AUGCCG- -5'
1659 3' -63.3 NC_001347.2 + 194475 0.66 0.738157
Target:  5'- gCGGGuCGuuggcucccgcuguGCUgGCCGCCGcuGC-ACGGCa -3'
miRNA:   3'- gGCCC-GU--------------UGGgCGGCGGC--CGaUGCCG- -5'
1659 3' -63.3 NC_001347.2 + 172666 0.66 0.735471
Target:  5'- uCCGGG-AuggaucgcaagacgcGCCUcucggaGCCGCCGacgcuggcGCUGCGGCu -3'
miRNA:   3'- -GGCCCgU---------------UGGG------CGGCGGC--------CGAUGCCG- -5'
1659 3' -63.3 NC_001347.2 + 26037 0.66 0.73188
Target:  5'- aCCuuGCGGauaCGCCGCCGggcGCUGCGGUc -3'
miRNA:   3'- -GGccCGUUgg-GCGGCGGC---CGAUGCCG- -5'
1659 3' -63.3 NC_001347.2 + 59090 0.66 0.73188
Target:  5'- gUGGcGCGGCCUccuccucuCUGCUGaGCUGCGGCc -3'
miRNA:   3'- gGCC-CGUUGGGc-------GGCGGC-CGAUGCCG- -5'
1659 3' -63.3 NC_001347.2 + 109447 0.66 0.73188
Target:  5'- aCCGaGcGCAAgacgcCCCGCgucaCCGGCgGCGGCg -3'
miRNA:   3'- -GGC-C-CGUU-----GGGCGgc--GGCCGaUGCCG- -5'
1659 3' -63.3 NC_001347.2 + 40512 0.66 0.730981
Target:  5'- aCCGGGCuucGggacgguguuucgGCgCGCUGCCGGUgcguuccACGGUc -3'
miRNA:   3'- -GGCCCG---U-------------UGgGCGGCGGCCGa------UGCCG- -5'
1659 3' -63.3 NC_001347.2 + 149891 0.66 0.726472
Target:  5'- -aGGGCGgccguuucuuuuuacAcagcCCCGCCGUgGGUUuuaaGCGGCa -3'
miRNA:   3'- ggCCCGU---------------U----GGGCGGCGgCCGA----UGCCG- -5'
1659 3' -63.3 NC_001347.2 + 154942 0.66 0.722853
Target:  5'- gCCGGcGaCGGCuCCGCCGCa-GCUAgUGGUg -3'
miRNA:   3'- -GGCC-C-GUUG-GGCGGCGgcCGAU-GCCG- -5'
1659 3' -63.3 NC_001347.2 + 16523 0.66 0.722853
Target:  5'- uUCGaGGUAGCgCCaGCCGCCcGCU-UGGCc -3'
miRNA:   3'- -GGC-CCGUUG-GG-CGGCGGcCGAuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.