miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1659 5' -48.4 NC_001347.2 + 171597 0.66 0.999926
Target:  5'- gCAGCGGcugaCGGUgAACGUGGcucgcugcguGUUUGCg -3'
miRNA:   3'- -GUCGUCca--GCCGgUUGCAUU----------UAAACG- -5'
1659 5' -48.4 NC_001347.2 + 165084 0.66 0.999926
Target:  5'- ---gGGGUCGGgCAGCGgagguaagGAAggUGCg -3'
miRNA:   3'- gucgUCCAGCCgGUUGCa-------UUUaaACG- -5'
1659 5' -48.4 NC_001347.2 + 222786 0.66 0.999926
Target:  5'- uCGGCAuGUCGGCCGAC--AAAUc-GCa -3'
miRNA:   3'- -GUCGUcCAGCCGGUUGcaUUUAaaCG- -5'
1659 5' -48.4 NC_001347.2 + 171228 0.66 0.999926
Target:  5'- aAGCAcGUCGGaguUGACGggGGUUUGCu -3'
miRNA:   3'- gUCGUcCAGCCg--GUUGCauUUAAACG- -5'
1659 5' -48.4 NC_001347.2 + 142586 0.66 0.999926
Target:  5'- gCAGCGGGggCGGCgggggCAGCGgguuaUUGCc -3'
miRNA:   3'- -GUCGUCCa-GCCG-----GUUGCauuuaAACG- -5'
1659 5' -48.4 NC_001347.2 + 1736 0.66 0.999898
Target:  5'- gCGGUGGGcCGGCaCGACGguggcgcUGCa -3'
miRNA:   3'- -GUCGUCCaGCCG-GUUGCauuuaa-ACG- -5'
1659 5' -48.4 NC_001347.2 + 85476 0.66 0.999792
Target:  5'- aCAGCAGaUCGGCCAG-GUAcucgcGCa -3'
miRNA:   3'- -GUCGUCcAGCCGGUUgCAUuuaaaCG- -5'
1659 5' -48.4 NC_001347.2 + 76255 0.66 0.999792
Target:  5'- gAGCAGGUCG-CCAAaGUccAGGUcggUGCa -3'
miRNA:   3'- gUCGUCCAGCcGGUUgCA--UUUAa--ACG- -5'
1659 5' -48.4 NC_001347.2 + 125764 0.67 0.999736
Target:  5'- gCAGCAGcacguaaUCGGCCAcagGCGcGGcUUUGCg -3'
miRNA:   3'- -GUCGUCc------AGCCGGU---UGCaUUuAAACG- -5'
1659 5' -48.4 NC_001347.2 + 77760 0.67 0.999736
Target:  5'- gAGCgAGG-CGGCCgAGCGggcgcAAUUUGUa -3'
miRNA:   3'- gUCG-UCCaGCCGG-UUGCau---UUAAACG- -5'
1659 5' -48.4 NC_001347.2 + 97081 0.67 0.999696
Target:  5'- aCAGaCAGG-CGGCCAGCuucaucgucUUGCg -3'
miRNA:   3'- -GUC-GUCCaGCCGGUUGcauuua---AACG- -5'
1659 5' -48.4 NC_001347.2 + 168544 0.67 0.999667
Target:  5'- aCAGCGGGUCGcgcGCCGucuguacCGUGGcgUgGCu -3'
miRNA:   3'- -GUCGUCCAGC---CGGUu------GCAUUuaAaCG- -5'
1659 5' -48.4 NC_001347.2 + 142427 0.67 0.999582
Target:  5'- cCAGUGGcGUCGGCgCGGCGUccg---GCg -3'
miRNA:   3'- -GUCGUC-CAGCCG-GUUGCAuuuaaaCG- -5'
1659 5' -48.4 NC_001347.2 + 100320 0.67 0.999582
Target:  5'- gCGGCAGG-CaGGCCAuaGCGUAGcgUUc- -3'
miRNA:   3'- -GUCGUCCaG-CCGGU--UGCAUUuaAAcg -5'
1659 5' -48.4 NC_001347.2 + 37269 0.67 0.99948
Target:  5'- gCAGCggAGGUgGGCCGGgGcccguUUUGCa -3'
miRNA:   3'- -GUCG--UCCAgCCGGUUgCauuu-AAACG- -5'
1659 5' -48.4 NC_001347.2 + 225523 0.67 0.99948
Target:  5'- cCGGCGGGcgaaUCGGCCGGC-UGGucGUcgGCg -3'
miRNA:   3'- -GUCGUCC----AGCCGGUUGcAUU--UAaaCG- -5'
1659 5' -48.4 NC_001347.2 + 191141 0.67 0.99948
Target:  5'- aUAGCAGcGUCGcGCCAugccGCGUGAc---GCu -3'
miRNA:   3'- -GUCGUC-CAGC-CGGU----UGCAUUuaaaCG- -5'
1659 5' -48.4 NC_001347.2 + 153259 0.67 0.999356
Target:  5'- aCGGCGGuucgccgugguuGUUGGCCGACGUAGc---GCc -3'
miRNA:   3'- -GUCGUC------------CAGCCGGUUGCAUUuaaaCG- -5'
1659 5' -48.4 NC_001347.2 + 156680 0.67 0.999356
Target:  5'- gCGGCGGGUCGuGgCGGCuGUGucgUUGUg -3'
miRNA:   3'- -GUCGUCCAGC-CgGUUG-CAUuuaAACG- -5'
1659 5' -48.4 NC_001347.2 + 209427 0.68 0.999207
Target:  5'- gCGGaCAGGccaCGGUCAGCGUA--UUUGUc -3'
miRNA:   3'- -GUC-GUCCa--GCCGGUUGCAUuuAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.