miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16590 5' -52.2 NC_004117.1 + 18002 0.66 0.991721
Target:  5'- uGCGUUCGUUG-----GUGCGAGCCGu -3'
miRNA:   3'- cCGUAAGCAGCugcugCACGCUUGGU- -5'
16590 5' -52.2 NC_004117.1 + 123156 0.66 0.991721
Target:  5'- aGCAaa-GUUGGCGGCG-GCGcGCCGu -3'
miRNA:   3'- cCGUaagCAGCUGCUGCaCGCuUGGU- -5'
16590 5' -52.2 NC_004117.1 + 104329 0.66 0.989246
Target:  5'- -aCGUUCGUUGAUcuguGCG-GCGGACCGg -3'
miRNA:   3'- ccGUAAGCAGCUGc---UGCaCGCUUGGU- -5'
16590 5' -52.2 NC_004117.1 + 34435 0.67 0.980539
Target:  5'- gGGCAaagUCGUUGACaccguACGUGUGAAUg- -3'
miRNA:   3'- -CCGUa--AGCAGCUGc----UGCACGCUUGgu -5'
16590 5' -52.2 NC_004117.1 + 135886 0.67 0.978299
Target:  5'- cGGCGauuaugucaauUUUGUCGACauuaACGUGCGcAACUAu -3'
miRNA:   3'- -CCGU-----------AAGCAGCUGc---UGCACGC-UUGGU- -5'
16590 5' -52.2 NC_004117.1 + 137295 0.68 0.973256
Target:  5'- uGGCGUUuuauuaCGUCGGaaauUGAUGUGauCGAACCAa -3'
miRNA:   3'- -CCGUAA------GCAGCU----GCUGCAC--GCUUGGU- -5'
16590 5' -52.2 NC_004117.1 + 8770 0.68 0.964176
Target:  5'- cGCGUgcguaGUCGGCGGCGaaccGCGAcACCGa -3'
miRNA:   3'- cCGUAag---CAGCUGCUGCa---CGCU-UGGU- -5'
16590 5' -52.2 NC_004117.1 + 48488 0.69 0.948994
Target:  5'- aGUGUaCGUCGACGAUGauCGGGCCAa -3'
miRNA:   3'- cCGUAaGCAGCUGCUGCacGCUUGGU- -5'
16590 5' -52.2 NC_004117.1 + 129590 0.7 0.930049
Target:  5'- uGGCuaGUUCGUgCGGCGAUacagguauuGUGaCGGGCCAg -3'
miRNA:   3'- -CCG--UAAGCA-GCUGCUG---------CAC-GCUUGGU- -5'
16590 5' -52.2 NC_004117.1 + 67902 0.7 0.918553
Target:  5'- uGGCGacaccgaUGUCGACGAUGUgcuugucGCGAGCCu -3'
miRNA:   3'- -CCGUaa-----GCAGCUGCUGCA-------CGCUUGGu -5'
16590 5' -52.2 NC_004117.1 + 96593 0.72 0.85039
Target:  5'- --uGUUCGUCGACGGCGUGUGcguuuuGCgCAa -3'
miRNA:   3'- ccgUAAGCAGCUGCUGCACGCu-----UG-GU- -5'
16590 5' -52.2 NC_004117.1 + 90240 0.73 0.78082
Target:  5'- uGGCAUUgaUGaUCGACGACauggugGCGAACCGa -3'
miRNA:   3'- -CCGUAA--GC-AGCUGCUGca----CGCUUGGU- -5'
16590 5' -52.2 NC_004117.1 + 96447 1.11 0.006373
Target:  5'- gGGCAUUCGUCGACGACGUGCGAACCAc -3'
miRNA:   3'- -CCGUAAGCAGCUGCUGCACGCUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.