miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16592 3' -51.4 NC_004117.1 + 77419 0.66 0.991429
Target:  5'- cGACCcgaGCCGgaaugaaUCGUCGUCUUcgguAGCCu -3'
miRNA:   3'- cUUGGuaaCGGC-------AGCAGUAGAG----UCGG- -5'
16592 3' -51.4 NC_004117.1 + 59258 0.66 0.990326
Target:  5'- -cACCGUcGCUGUcCGUCGUUguacgaGGCCg -3'
miRNA:   3'- cuUGGUAaCGGCA-GCAGUAGag----UCGG- -5'
16592 3' -51.4 NC_004117.1 + 87581 0.66 0.988973
Target:  5'- uAACCGUcGUCGUCGUCcUCguaGGCa -3'
miRNA:   3'- cUUGGUAaCGGCAGCAGuAGag-UCGg -5'
16592 3' -51.4 NC_004117.1 + 90423 0.66 0.988973
Target:  5'- -cACCA-UGUCGUCGaUCAUCaauGCCa -3'
miRNA:   3'- cuUGGUaACGGCAGC-AGUAGaguCGG- -5'
16592 3' -51.4 NC_004117.1 + 95874 0.67 0.98583
Target:  5'- uGACCGcUGCCGgCGUCGUacaCUUGGCg -3'
miRNA:   3'- cUUGGUaACGGCaGCAGUA---GAGUCGg -5'
16592 3' -51.4 NC_004117.1 + 59045 0.67 0.984021
Target:  5'- uAAUguUUGCUGUCGUUgAUCgcuUCGGCCu -3'
miRNA:   3'- cUUGguAACGGCAGCAG-UAG---AGUCGG- -5'
16592 3' -51.4 NC_004117.1 + 98342 0.67 0.977542
Target:  5'- -uACCGUUGCCaUUGUgCGUUUUAGCa -3'
miRNA:   3'- cuUGGUAACGGcAGCA-GUAGAGUCGg -5'
16592 3' -51.4 NC_004117.1 + 70175 0.68 0.969307
Target:  5'- cGAACCgGUUG-CGUCG-CGUCgcCGGCCg -3'
miRNA:   3'- -CUUGG-UAACgGCAGCaGUAGa-GUCGG- -5'
16592 3' -51.4 NC_004117.1 + 122095 0.68 0.962741
Target:  5'- --gUCAUcGUCGUCGUCGUCgUCGGUg -3'
miRNA:   3'- cuuGGUAaCGGCAGCAGUAG-AGUCGg -5'
16592 3' -51.4 NC_004117.1 + 133219 0.69 0.942223
Target:  5'- -uAUCGuUUGCCGUCGUaaAUC-CAGCCa -3'
miRNA:   3'- cuUGGU-AACGGCAGCAg-UAGaGUCGG- -5'
16592 3' -51.4 NC_004117.1 + 29460 0.71 0.875195
Target:  5'- -uGCCAUUGCCGUggacgcUGUCgAUCUCA-CCg -3'
miRNA:   3'- cuUGGUAACGGCA------GCAG-UAGAGUcGG- -5'
16592 3' -51.4 NC_004117.1 + 129645 1.12 0.005235
Target:  5'- gGAACCAUUGCCGUCGUCAUCUCAGCCu -3'
miRNA:   3'- -CUUGGUAACGGCAGCAGUAGAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.