Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16593 | 5' | -42.4 | NC_004117.1 | + | 157505 | 0.67 | 1 |
Target: 5'- aCGUugAAccGUgg-CAUUGCGCAUUa -3' miRNA: 3'- aGCGugUUauUAaaaGUAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 157109 | 0.67 | 1 |
Target: 5'- -aGUACAAUA-------UUGCGCGCCc -3' miRNA: 3'- agCGUGUUAUuaaaaguAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 46158 | 0.67 | 1 |
Target: 5'- aCGCGCA--GAg--UgAUUGCGCuACCc -3' miRNA: 3'- aGCGUGUuaUUaaaAgUAACGCG-UGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 71377 | 0.67 | 1 |
Target: 5'- uUCGCGCAAaucauagUgAUUGCGCAa- -3' miRNA: 3'- -AGCGUGUUauuaaa-AgUAACGCGUgg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 96395 | 0.67 | 1 |
Target: 5'- -gGCACAA------UCGUUGCGCAa- -3' miRNA: 3'- agCGUGUUauuaaaAGUAACGCGUgg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 125564 | 0.69 | 0.999999 |
Target: 5'- gUGCACA---AUUUUCAUaGUGUAUCa -3' miRNA: 3'- aGCGUGUuauUAAAAGUAaCGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 27798 | 0.69 | 0.999999 |
Target: 5'- aUGUACAGUGcaa-UCAcuUUGCGCACg -3' miRNA: 3'- aGCGUGUUAUuaaaAGU--AACGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 77760 | 0.69 | 0.999999 |
Target: 5'- -gGCGCAAUGGgcaugUUUggUGCGCugUg -3' miRNA: 3'- agCGUGUUAUUaa---AAGuaACGCGugG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 118413 | 0.68 | 0.999999 |
Target: 5'- uUCGCGCGAUcGAUUcugcCAgucGCGUGCCg -3' miRNA: 3'- -AGCGUGUUA-UUAAaa--GUaa-CGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 19099 | 0.69 | 0.999997 |
Target: 5'- cCGCGCAAUAAggUUCGUcGgGUuuCCa -3' miRNA: 3'- aGCGUGUUAUUaaAAGUAaCgCGu-GG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 22831 | 0.69 | 0.999996 |
Target: 5'- gCGUGCAAgu-UUUUUAaauguUUGCGCAUCg -3' miRNA: 3'- aGCGUGUUauuAAAAGU-----AACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 146637 | 0.7 | 0.999995 |
Target: 5'- aUUGC-CGgcAUGAUUUaCGUUgGCGCACCu -3' miRNA: 3'- -AGCGuGU--UAUUAAAaGUAA-CGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 67915 | 0.7 | 0.999995 |
Target: 5'- aUUGCACA--AAUg---AUUGUGCACCa -3' miRNA: 3'- -AGCGUGUuaUUAaaagUAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 131957 | 0.7 | 0.999992 |
Target: 5'- aUCGCACAAUAAUUcUUCAgaaUGgGCu-- -3' miRNA: 3'- -AGCGUGUUAUUAA-AAGUa--ACgCGugg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 148667 | 0.7 | 0.999989 |
Target: 5'- cUUGCACGAUGGUgaaaagAUUGUGUAUCg -3' miRNA: 3'- -AGCGUGUUAUUAaaag--UAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 32884 | 0.7 | 0.999989 |
Target: 5'- aUGUACAuGUAGUUUUCG-UGCGaCACUc -3' miRNA: 3'- aGCGUGU-UAUUAAAAGUaACGC-GUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 12327 | 0.7 | 0.999984 |
Target: 5'- -aGCGCAAUGGUgaauagCug-GCGCGCUa -3' miRNA: 3'- agCGUGUUAUUAaaa---GuaaCGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 33743 | 0.7 | 0.999978 |
Target: 5'- -gGCAaaucaAAUGAUcgcUCAUcaUGCGCACCa -3' miRNA: 3'- agCGUg----UUAUUAaa-AGUA--ACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 72120 | 0.7 | 0.999978 |
Target: 5'- aCGCGCGAUGcg--UCGUgcugGUGCGCg -3' miRNA: 3'- aGCGUGUUAUuaaaAGUAa---CGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 132974 | 0.7 | 0.999977 |
Target: 5'- gUCGCGCAcaaucguccacagAUAgaacAUUUugUCGUUGCGCAUa -3' miRNA: 3'- -AGCGUGU-------------UAU----UAAA--AGUAACGCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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