miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
166 5' -61.2 AC_000007.1 + 12121 0.66 0.304658
Target:  5'- gCGCUGACCUGcGCUggGCcccaAGCCGa -3'
miRNA:   3'- aGCGGCUGGAC-CGGgaCGaag-UCGGC- -5'
166 5' -61.2 AC_000007.1 + 12187 0.66 0.304658
Target:  5'- gCGUCGGCUuggGGCCCaGCgcaggUCAGCg- -3'
miRNA:   3'- aGCGGCUGGa--CCGGGaCGa----AGUCGgc -5'
166 5' -61.2 AC_000007.1 + 2217 0.66 0.289887
Target:  5'- cCGCCGccGCCUGGCuuccuCCUGCUguuGCUc -3'
miRNA:   3'- aGCGGC--UGGACCG-----GGACGAaguCGGc -5'
166 5' -61.2 AC_000007.1 + 3759 0.66 0.275684
Target:  5'- aCGCCGuuggagacugcaGCCUccGCCgCcGCUUCAGCCGc -3'
miRNA:   3'- aGCGGC------------UGGAc-CGG-GaCGAAGUCGGC- -5'
166 5' -61.2 AC_000007.1 + 34108 0.68 0.226762
Target:  5'- aCGcCCGcACCUGGUuuUGCUUCAGgaaauaugacuacguCCGg -3'
miRNA:   3'- aGC-GGC-UGGACCGggACGAAGUC---------------GGC- -5'
166 5' -61.2 AC_000007.1 + 5398 0.72 0.104464
Target:  5'- cUGCCGGuCUUcGCCCUGCgcgUCGGCCa -3'
miRNA:   3'- aGCGGCU-GGAcCGGGACGa--AGUCGGc -5'
166 5' -61.2 AC_000007.1 + 12607 0.77 0.048015
Target:  5'- -gGCCGGCCucaucgggccggaUGGCCCUGuUUUCGGCCa -3'
miRNA:   3'- agCGGCUGG-------------ACCGGGAC-GAAGUCGGc -5'
166 5' -61.2 AC_000007.1 + 12565 0.78 0.040433
Target:  5'- -gGCCGGCCUGGUCuacgacgcgCUGCUUCAGCgCGu -3'
miRNA:   3'- agCGGCUGGACCGG---------GACGAAGUCG-GC- -5'
166 5' -61.2 AC_000007.1 + 10127 1.09 0.000144
Target:  5'- gUCGCCGACCUGGCCCUGCUUCAGCCGa -3'
miRNA:   3'- -AGCGGCUGGACCGGGACGAAGUCGGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.