miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1662 3' -56.6 NC_001347.2 + 64212 0.66 0.96008
Target:  5'- uCCGUCGACGgugUCGUcaCGGCGUcaGACu- -3'
miRNA:   3'- -GGCGGCUGC---AGCGcaGCCGCA--UUGuu -5'
1662 3' -56.6 NC_001347.2 + 106216 0.66 0.96008
Target:  5'- cCCGCCggccacgagccaGACGagGCGgCGGCgGUGGCGu -3'
miRNA:   3'- -GGCGG------------CUGCagCGCaGCCG-CAUUGUu -5'
1662 3' -56.6 NC_001347.2 + 153362 0.66 0.956548
Target:  5'- -gGCCGAgCGUCGUucgcgCGGCGUGcGCAc -3'
miRNA:   3'- ggCGGCU-GCAGCGca---GCCGCAU-UGUu -5'
1662 3' -56.6 NC_001347.2 + 93200 0.66 0.956548
Target:  5'- gCGCCGAgCGcUCGCGcUGGCG--ACGAg -3'
miRNA:   3'- gGCGGCU-GC-AGCGCaGCCGCauUGUU- -5'
1662 3' -56.6 NC_001347.2 + 170067 0.66 0.956548
Target:  5'- gUGgCGGCGUCGUcaGUUGGCGUccCGAg -3'
miRNA:   3'- gGCgGCUGCAGCG--CAGCCGCAuuGUU- -5'
1662 3' -56.6 NC_001347.2 + 151934 0.66 0.956184
Target:  5'- aCCGCCGGCGUgGUuucccgGUCGGaCGcgauugaUGGCAc -3'
miRNA:   3'- -GGCGGCUGCAgCG------CAGCC-GC-------AUUGUu -5'
1662 3' -56.6 NC_001347.2 + 192131 0.66 0.95281
Target:  5'- aCCGCCGuCGUUGCcgGUCcccguuuccuccGGCGUcGCGGu -3'
miRNA:   3'- -GGCGGCuGCAGCG--CAG------------CCGCAuUGUU- -5'
1662 3' -56.6 NC_001347.2 + 158196 0.66 0.95281
Target:  5'- -gGCCGugGUC-UGUCGGCaGUgcgGACAc -3'
miRNA:   3'- ggCGGCugCAGcGCAGCCG-CA---UUGUu -5'
1662 3' -56.6 NC_001347.2 + 2105 0.66 0.94886
Target:  5'- gCCGCCGGCGggggCGCGauuugCGuGCcUAACGc -3'
miRNA:   3'- -GGCGGCUGCa---GCGCa----GC-CGcAUUGUu -5'
1662 3' -56.6 NC_001347.2 + 164159 0.66 0.94032
Target:  5'- aCGCCGugGuauuccUCGCGUUGaCGUuGCAAc -3'
miRNA:   3'- gGCGGCugC------AGCGCAGCcGCAuUGUU- -5'
1662 3' -56.6 NC_001347.2 + 39378 0.66 0.94032
Target:  5'- aCGCCGugGcCcgGCGUCGuCGUAGCc- -3'
miRNA:   3'- gGCGGCugCaG--CGCAGCcGCAUUGuu -5'
1662 3' -56.6 NC_001347.2 + 19626 0.67 0.935724
Target:  5'- aCCGCCGGCGUUGCcgccauGUCGcuccGCGgu-CAGg -3'
miRNA:   3'- -GGCGGCUGCAGCG------CAGC----CGCauuGUU- -5'
1662 3' -56.6 NC_001347.2 + 6870 0.67 0.935724
Target:  5'- gCCGCCGAgccCGUCGaCGUUGccgaaGUAACAu -3'
miRNA:   3'- -GGCGGCU---GCAGC-GCAGCcg---CAUUGUu -5'
1662 3' -56.6 NC_001347.2 + 198576 0.67 0.930909
Target:  5'- aCGCCGGCGugcUCGCGUagaGcGCGUGuCGu -3'
miRNA:   3'- gGCGGCUGC---AGCGCAg--C-CGCAUuGUu -5'
1662 3' -56.6 NC_001347.2 + 78339 0.67 0.930909
Target:  5'- cCCGCgCGugGUCcggGCGgaccCGGCGUggUGGg -3'
miRNA:   3'- -GGCG-GCugCAG---CGCa---GCCGCAuuGUU- -5'
1662 3' -56.6 NC_001347.2 + 210003 0.67 0.925875
Target:  5'- aCCGCCGG-GUCGCGguccgcCGGUGUuggGACc- -3'
miRNA:   3'- -GGCGGCUgCAGCGCa-----GCCGCA---UUGuu -5'
1662 3' -56.6 NC_001347.2 + 90179 0.67 0.922749
Target:  5'- gCgGCCGcgaaacgcuccagcACGUCGUGUCgacguagaaaagacGGCGUGGCGg -3'
miRNA:   3'- -GgCGGC--------------UGCAGCGCAG--------------CCGCAUUGUu -5'
1662 3' -56.6 NC_001347.2 + 38313 0.67 0.920621
Target:  5'- cCCGCCGGCGgCGCcGUaCGGCu--GCGGa -3'
miRNA:   3'- -GGCGGCUGCaGCG-CA-GCCGcauUGUU- -5'
1662 3' -56.6 NC_001347.2 + 67446 0.67 0.920621
Target:  5'- aCGgCGACGUCGaCGaCGGCG--ACGAa -3'
miRNA:   3'- gGCgGCUGCAGC-GCaGCCGCauUGUU- -5'
1662 3' -56.6 NC_001347.2 + 1696 0.68 0.909456
Target:  5'- gCGCCGAgGagGCGaCGGCGcucgGACGGg -3'
miRNA:   3'- gGCGGCUgCagCGCaGCCGCa---UUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.