miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1662 5' -53 NC_001347.2 + 53128 0.66 0.991145
Target:  5'- uGACguaUUCcaaACCGCaugacgCGGCGACGUUu -3'
miRNA:   3'- -CUGaaaAAG---UGGCGga----GCCGCUGCAG- -5'
1662 5' -53 NC_001347.2 + 174255 0.66 0.989928
Target:  5'- cGCgucggUCGCCGCCUCcGCGGCc-- -3'
miRNA:   3'- cUGaaaa-AGUGGCGGAGcCGCUGcag -5'
1662 5' -53 NC_001347.2 + 207636 0.66 0.989928
Target:  5'- aGCgg---UACCGuaCCUCGGCGACGcUCc -3'
miRNA:   3'- cUGaaaaaGUGGC--GGAGCCGCUGC-AG- -5'
1662 5' -53 NC_001347.2 + 105217 0.66 0.989928
Target:  5'- ----aUUUCACCGCCgcuaUGGCGGCc-- -3'
miRNA:   3'- cugaaAAAGUGGCGGa---GCCGCUGcag -5'
1662 5' -53 NC_001347.2 + 191459 0.66 0.989928
Target:  5'- cGGCgua--CGCCGCCUUGG--GCGUCa -3'
miRNA:   3'- -CUGaaaaaGUGGCGGAGCCgcUGCAG- -5'
1662 5' -53 NC_001347.2 + 200223 0.66 0.989928
Target:  5'- gGGCUcgccCACUGaCUCGGCG-CGUCa -3'
miRNA:   3'- -CUGAaaaaGUGGCgGAGCCGCuGCAG- -5'
1662 5' -53 NC_001347.2 + 188177 0.66 0.989928
Target:  5'- -------aCGCUGCCcguUCGGCGGcCGUCg -3'
miRNA:   3'- cugaaaaaGUGGCGG---AGCCGCU-GCAG- -5'
1662 5' -53 NC_001347.2 + 91296 0.67 0.985478
Target:  5'- cGGCUUcagUACCGCCgucgagGGCGACG-Ca -3'
miRNA:   3'- -CUGAAaaaGUGGCGGag----CCGCUGCaG- -5'
1662 5' -53 NC_001347.2 + 174133 0.67 0.983703
Target:  5'- aGACcagc-CACCGucCCUCaGCGACGUCc -3'
miRNA:   3'- -CUGaaaaaGUGGC--GGAGcCGCUGCAG- -5'
1662 5' -53 NC_001347.2 + 196958 0.67 0.983703
Target:  5'- gGGCUgucgcgCGCCGCCgacgcccgagaCGGCGcGCGUCc -3'
miRNA:   3'- -CUGAaaaa--GUGGCGGa----------GCCGC-UGCAG- -5'
1662 5' -53 NC_001347.2 + 86264 0.67 0.981767
Target:  5'- cGGCgcg--CGaaGCUUCGGCGGCGUg -3'
miRNA:   3'- -CUGaaaaaGUggCGGAGCCGCUGCAg -5'
1662 5' -53 NC_001347.2 + 169170 0.67 0.981767
Target:  5'- uGCUgcacCGCCGCCUCgagacgcugGGCuGCGUCa -3'
miRNA:   3'- cUGAaaaaGUGGCGGAG---------CCGcUGCAG- -5'
1662 5' -53 NC_001347.2 + 157639 0.67 0.977149
Target:  5'- gGACggugUCACCGCCUCgcugcuaGGUGACcuUCa -3'
miRNA:   3'- -CUGaaaaAGUGGCGGAG-------CCGCUGc-AG- -5'
1662 5' -53 NC_001347.2 + 155893 0.68 0.97255
Target:  5'- aGACgag-UCGgCGCCggguaaauaaaucggCGGUGGCGUCg -3'
miRNA:   3'- -CUGaaaaAGUgGCGGa--------------GCCGCUGCAG- -5'
1662 5' -53 NC_001347.2 + 160690 0.68 0.969429
Target:  5'- ------cUCGCCGCUgccuacgcgaUCGGCGGcCGUCa -3'
miRNA:   3'- cugaaaaAGUGGCGG----------AGCCGCU-GCAG- -5'
1662 5' -53 NC_001347.2 + 16937 0.68 0.966381
Target:  5'- cGGCagUUUCGCUGgCUCugucgaGGCGACGUUu -3'
miRNA:   3'- -CUGaaAAAGUGGCgGAG------CCGCUGCAG- -5'
1662 5' -53 NC_001347.2 + 38713 0.68 0.966064
Target:  5'- aGCgccgUCGCCuCCUCGGCGcgcagcaACGUCu -3'
miRNA:   3'- cUGaaaaAGUGGcGGAGCCGC-------UGCAG- -5'
1662 5' -53 NC_001347.2 + 150573 0.69 0.961067
Target:  5'- cGGCgUUUUCAgCGUCggcuccggcaguagUGGCGGCGUCg -3'
miRNA:   3'- -CUGaAAAAGUgGCGGa-------------GCCGCUGCAG- -5'
1662 5' -53 NC_001347.2 + 124872 0.7 0.938941
Target:  5'- uGACa---UCACCGCCUCccgaGGC-ACGUCg -3'
miRNA:   3'- -CUGaaaaAGUGGCGGAG----CCGcUGCAG- -5'
1662 5' -53 NC_001347.2 + 39699 0.7 0.929035
Target:  5'- uGCUgg--CGCCGCCUUGGCGccacGCaGUCu -3'
miRNA:   3'- cUGAaaaaGUGGCGGAGCCGC----UG-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.