Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16626 | 5' | -48.3 | NC_004156.1 | + | 8198 | 0.73 | 0.965166 |
Target: 5'- aGCAaCCCCAU--CAUCAGCAGUgUCa -3' miRNA: 3'- aCGUaGGGGUAuuGUGGUUGUUAgAG- -5' |
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16626 | 5' | -48.3 | NC_004156.1 | + | 96474 | 0.73 | 0.953934 |
Target: 5'- aUGCAUCguUCCGUGucCACCAgauguACAGUCUCg -3' miRNA: 3'- -ACGUAG--GGGUAUu-GUGGU-----UGUUAGAG- -5' |
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16626 | 5' | -48.3 | NC_004156.1 | + | 107335 | 0.77 | 0.839094 |
Target: 5'- aGCAUCCUCccGACACUcguACAAUCUCu -3' miRNA: 3'- aCGUAGGGGuaUUGUGGu--UGUUAGAG- -5' |
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16626 | 5' | -48.3 | NC_004156.1 | + | 8228 | 1.12 | 0.013953 |
Target: 5'- gUGCAUCCCCAUAACACCAACAAUCUCa -3' miRNA: 3'- -ACGUAGGGGUAUUGUGGUUGUUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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