miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16628 5' -51.5 NC_004156.1 + 107003 0.66 0.998197
Target:  5'- -aCCA-CuCGUCUUUGGUAgAGUGCa -3'
miRNA:   3'- caGGUuGuGCAGGAGCCAUgUCAUGg -5'
16628 5' -51.5 NC_004156.1 + 112189 0.66 0.997857
Target:  5'- -aCCAGuugaACGUCUUUGGUGC-GUACa -3'
miRNA:   3'- caGGUUg---UGCAGGAGCCAUGuCAUGg -5'
16628 5' -51.5 NC_004156.1 + 175772 0.66 0.997466
Target:  5'- cUCCGAuCACGUCUagaCGGUGCucGUccACCg -3'
miRNA:   3'- cAGGUU-GUGCAGGa--GCCAUGu-CA--UGG- -5'
16628 5' -51.5 NC_004156.1 + 178399 0.66 0.996503
Target:  5'- aGUCUAGCuuGUCUggCGGUgGCucuuGUGCCa -3'
miRNA:   3'- -CAGGUUGugCAGGa-GCCA-UGu---CAUGG- -5'
16628 5' -51.5 NC_004156.1 + 108689 0.66 0.996503
Target:  5'- aUCguACAgGUCCUUGG-ACAGaucgACCu -3'
miRNA:   3'- cAGguUGUgCAGGAGCCaUGUCa---UGG- -5'
16628 5' -51.5 NC_004156.1 + 93463 0.67 0.995257
Target:  5'- --aCAACAUGUCCgaugCGGU-CAGgauCCg -3'
miRNA:   3'- cagGUUGUGCAGGa---GCCAuGUCau-GG- -5'
16628 5' -51.5 NC_004156.1 + 96227 0.67 0.995257
Target:  5'- aGUCUgaGACAUGcCCUCcaGG-ACAGUGCUa -3'
miRNA:   3'- -CAGG--UUGUGCaGGAG--CCaUGUCAUGG- -5'
16628 5' -51.5 NC_004156.1 + 14928 0.68 0.991351
Target:  5'- -aCUAGuuUGUCCUuuuuaaaguuuaccCGGUACGGUACCa -3'
miRNA:   3'- caGGUUguGCAGGA--------------GCCAUGUCAUGG- -5'
16628 5' -51.5 NC_004156.1 + 73358 0.68 0.989239
Target:  5'- -aCCGuaGC-CGUCCUCaGUAUGGUACUc -3'
miRNA:   3'- caGGU--UGuGCAGGAGcCAUGUCAUGG- -5'
16628 5' -51.5 NC_004156.1 + 145047 0.68 0.987821
Target:  5'- cGUUCAACAC-UCCccCGGUACcGUACa -3'
miRNA:   3'- -CAGGUUGUGcAGGa-GCCAUGuCAUGg -5'
16628 5' -51.5 NC_004156.1 + 15213 0.68 0.986263
Target:  5'- cGUCUAACGC--CCUgGGUcAUGGUACCg -3'
miRNA:   3'- -CAGGUUGUGcaGGAgCCA-UGUCAUGG- -5'
16628 5' -51.5 NC_004156.1 + 15795 0.69 0.982693
Target:  5'- -gCCGAgGaGUgCCUCGGUGCAGaugcUACCg -3'
miRNA:   3'- caGGUUgUgCA-GGAGCCAUGUC----AUGG- -5'
16628 5' -51.5 NC_004156.1 + 213979 0.69 0.980665
Target:  5'- gGUCCAguuggACGCGUCCgguGUGCAGgguaACCu -3'
miRNA:   3'- -CAGGU-----UGUGCAGGagcCAUGUCa---UGG- -5'
16628 5' -51.5 NC_004156.1 + 207479 0.69 0.976085
Target:  5'- -cCCAgauuGCugGgcaCUCGGUACGGcGCCa -3'
miRNA:   3'- caGGU----UGugCag-GAGCCAUGUCaUGG- -5'
16628 5' -51.5 NC_004156.1 + 43852 0.69 0.976085
Target:  5'- -aCCAACACuGUCCUU--UACuGUACCa -3'
miRNA:   3'- caGGUUGUG-CAGGAGccAUGuCAUGG- -5'
16628 5' -51.5 NC_004156.1 + 191648 0.7 0.973517
Target:  5'- -aCUGGCAUG-CCUCGGUACAGg--- -3'
miRNA:   3'- caGGUUGUGCaGGAGCCAUGUCaugg -5'
16628 5' -51.5 NC_004156.1 + 97586 0.7 0.967794
Target:  5'- uUCCAcccaACGUUCUaCGGUGCAGUuuucuGCCc -3'
miRNA:   3'- cAGGUug--UGCAGGA-GCCAUGUCA-----UGG- -5'
16628 5' -51.5 NC_004156.1 + 163538 0.7 0.967794
Target:  5'- -gCCGACAUGggCCUCGGU---GUACCc -3'
miRNA:   3'- caGGUUGUGCa-GGAGCCAuguCAUGG- -5'
16628 5' -51.5 NC_004156.1 + 179764 0.7 0.961245
Target:  5'- aGUCCcuugAGCGCGUCCacaucaaucUCGGUACcGUAgCg -3'
miRNA:   3'- -CAGG----UUGUGCAGG---------AGCCAUGuCAUgG- -5'
16628 5' -51.5 NC_004156.1 + 82006 0.72 0.936256
Target:  5'- cGUUgGugGCGUCUUUGauguuGUACGGUGCCa -3'
miRNA:   3'- -CAGgUugUGCAGGAGC-----CAUGUCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.