miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16629 5' -53.4 NC_004156.1 + 104306 0.66 0.988602
Target:  5'- -uUGCUAGgGACGCUAGagauGUGUaugCCa -3'
miRNA:   3'- ucACGGUCgCUGUGAUCg---UACAga-GG- -5'
16629 5' -53.4 NC_004156.1 + 142851 0.66 0.981761
Target:  5'- -aUGCaagaAGCGGCACUGGUGUGcgaaCUCa -3'
miRNA:   3'- ucACGg---UCGCUGUGAUCGUACa---GAGg -5'
16629 5' -53.4 NC_004156.1 + 133481 0.67 0.977359
Target:  5'- --aGgCAGCGACAUUAGCGgaucguaaacUGUUUCa -3'
miRNA:   3'- ucaCgGUCGCUGUGAUCGU----------ACAGAGg -5'
16629 5' -53.4 NC_004156.1 + 63712 0.67 0.977359
Target:  5'- ---aUCAGUGGCGCUAGUA-GUCUgCCg -3'
miRNA:   3'- ucacGGUCGCUGUGAUCGUaCAGA-GG- -5'
16629 5' -53.4 NC_004156.1 + 227288 0.67 0.974886
Target:  5'- aAGUGCCAacucUGAUACUAGUgauUGaCUCCa -3'
miRNA:   3'- -UCACGGUc---GCUGUGAUCGu--ACaGAGG- -5'
16629 5' -53.4 NC_004156.1 + 43400 0.67 0.971383
Target:  5'- gAGUGCUaccaaaaaaacuagAGCGAUgACUAGCAccgCUCCc -3'
miRNA:   3'- -UCACGG--------------UCGCUG-UGAUCGUacaGAGG- -5'
16629 5' -53.4 NC_004156.1 + 95948 0.67 0.970527
Target:  5'- --gGCCGGUGagaguagcaacuuuaGCACUguccuggagGGCAUGUCUCa -3'
miRNA:   3'- ucaCGGUCGC---------------UGUGA---------UCGUACAGAGg -5'
16629 5' -53.4 NC_004156.1 + 206245 0.68 0.951866
Target:  5'- cAGUGCCAGU----CUcAGCAaGUCUCCg -3'
miRNA:   3'- -UCACGGUCGcuguGA-UCGUaCAGAGG- -5'
16629 5' -53.4 NC_004156.1 + 164397 0.69 0.933795
Target:  5'- cAGUGCCAGC---ACUGGUAcccUCUCCa -3'
miRNA:   3'- -UCACGGUCGcugUGAUCGUac-AGAGG- -5'
16629 5' -53.4 NC_004156.1 + 80737 0.69 0.923342
Target:  5'- gAGUGCCAGCGuCGguaUGGCAUaGUgUCg -3'
miRNA:   3'- -UCACGGUCGCuGUg--AUCGUA-CAgAGg -5'
16629 5' -53.4 NC_004156.1 + 39533 1.13 0.003985
Target:  5'- cAGUGCCAGCGACACUAGCAUGUCUCCa -3'
miRNA:   3'- -UCACGGUCGCUGUGAUCGUACAGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.