miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1663 3' -47 NC_001347.2 + 191433 0.66 0.999992
Target:  5'- gGUGGAgcAGA--GCAGAaagaagagcucgGCGUaCGCCGc -3'
miRNA:   3'- aUACCU--UCUaaUGUCU------------UGCAaGCGGC- -5'
1663 3' -47 NC_001347.2 + 193477 0.66 0.999985
Target:  5'- cGUGGAcGcgUACGGcGCcguGUUCGCCu -3'
miRNA:   3'- aUACCUuCuaAUGUCuUG---CAAGCGGc -5'
1663 3' -47 NC_001347.2 + 40644 0.67 0.999909
Target:  5'- --cGGggGGUgUGCGGGACGgugUUgggGCCGg -3'
miRNA:   3'- auaCCuuCUA-AUGUCUUGCa--AG---CGGC- -5'
1663 3' -47 NC_001347.2 + 136743 0.68 0.999749
Target:  5'- --gGGggGGUUACGGugguuccCGUUcCGCCa -3'
miRNA:   3'- auaCCuuCUAAUGUCuu-----GCAA-GCGGc -5'
1663 3' -47 NC_001347.2 + 136833 0.68 0.999682
Target:  5'- gGUGGAAGcUaggcuccgccccUACGGGGCG-UCGCCu -3'
miRNA:   3'- aUACCUUCuA------------AUGUCUUGCaAGCGGc -5'
1663 3' -47 NC_001347.2 + 208989 0.68 0.999682
Target:  5'- --gGGAAGA-UGCAGGccaccuccagACGgUCGCCGu -3'
miRNA:   3'- auaCCUUCUaAUGUCU----------UGCaAGCGGC- -5'
1663 3' -47 NC_001347.2 + 212408 0.69 0.9996
Target:  5'- --aGGAGGGUcguaggUGCAGAuaggauGCGUauuuUCGCCGu -3'
miRNA:   3'- auaCCUUCUA------AUGUCU------UGCA----AGCGGC- -5'
1663 3' -47 NC_001347.2 + 200076 0.71 0.997139
Target:  5'- cAUGGAGGAgacccggGCGGGACGUUauauagugaggGCCGg -3'
miRNA:   3'- aUACCUUCUaa-----UGUCUUGCAAg----------CGGC- -5'
1663 3' -47 NC_001347.2 + 99596 0.72 0.9937
Target:  5'- gGUGGAAGAcagcGCGuGucCGUUCGCCGa -3'
miRNA:   3'- aUACCUUCUaa--UGU-CuuGCAAGCGGC- -5'
1663 3' -47 NC_001347.2 + 193003 0.74 0.979853
Target:  5'- gUGUGGAGGAcgGggUGGAGCGggUCGCCGa -3'
miRNA:   3'- -AUACCUUCUaaU--GUCUUGCa-AGCGGC- -5'
1663 3' -47 NC_001347.2 + 114775 1.1 0.029673
Target:  5'- uUAUGGAAGAUUACAGAACGUUCGCCGg -3'
miRNA:   3'- -AUACCUUCUAAUGUCUUGCAAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.