miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1663 5' -64 NC_001347.2 + 97649 0.66 0.700606
Target:  5'- gCCCGGCACgUCGUACagcuCGUCCcuGCugUCGu -3'
miRNA:   3'- -GGGCCGUG-GGCGUG----GCAGG--CGugGGU- -5'
1663 5' -64 NC_001347.2 + 142892 0.66 0.691401
Target:  5'- gCUGGCAaacUCCGaCAUucgCGUCgGCGCCCGg -3'
miRNA:   3'- gGGCCGU---GGGC-GUG---GCAGgCGUGGGU- -5'
1663 5' -64 NC_001347.2 + 58865 0.66 0.688632
Target:  5'- aCCGGCAgCgGCacGCCGgagugaccucucccaCGCACCCGc -3'
miRNA:   3'- gGGCCGUgGgCG--UGGCag-------------GCGUGGGU- -5'
1663 5' -64 NC_001347.2 + 27785 0.66 0.682156
Target:  5'- cUCUGGCGCCUGCccuggacgACCGUCUuuGCCg- -3'
miRNA:   3'- -GGGCCGUGGGCG--------UGGCAGGcgUGGgu -5'
1663 5' -64 NC_001347.2 + 38143 0.66 0.682156
Target:  5'- -aCGGCGCCCaGC-UCGUCCagcaGCACCa- -3'
miRNA:   3'- ggGCCGUGGG-CGuGGCAGG----CGUGGgu -5'
1663 5' -64 NC_001347.2 + 97162 0.66 0.682156
Target:  5'- uUCCGGCcaacauGCCCaGCAUC-UCCuCGCCCAu -3'
miRNA:   3'- -GGGCCG------UGGG-CGUGGcAGGcGUGGGU- -5'
1663 5' -64 NC_001347.2 + 38693 0.66 0.682156
Target:  5'- gCCGGCGCa-GCucCCGUCCgaGCGCCg- -3'
miRNA:   3'- gGGCCGUGggCGu-GGCAGG--CGUGGgu -5'
1663 5' -64 NC_001347.2 + 38239 0.66 0.682156
Target:  5'- gUCGGCGCCgcUGCugCugccgcGUCCGC-CCCGa -3'
miRNA:   3'- gGGCCGUGG--GCGugG------CAGGCGuGGGU- -5'
1663 5' -64 NC_001347.2 + 191202 0.66 0.682156
Target:  5'- cCCCGcaaCGCCgcucggaGCACCG-CCGCAgCCCGg -3'
miRNA:   3'- -GGGCc--GUGGg------CGUGGCaGGCGU-GGGU- -5'
1663 5' -64 NC_001347.2 + 1817 0.66 0.682156
Target:  5'- gCUGGCGCaguaCGaGCCGUucgcgucggcgCCGCACCCc -3'
miRNA:   3'- gGGCCGUGg---GCgUGGCA-----------GGCGUGGGu -5'
1663 5' -64 NC_001347.2 + 156893 0.66 0.681229
Target:  5'- aCCGuCAUCCGCcgucuccGCCGUgCGCGCCg- -3'
miRNA:   3'- gGGCcGUGGGCG-------UGGCAgGCGUGGgu -5'
1663 5' -64 NC_001347.2 + 156650 0.66 0.672876
Target:  5'- gCCgGGC-CUCGgcCGCCG-CCGCcACCCAu -3'
miRNA:   3'- -GGgCCGuGGGC--GUGGCaGGCG-UGGGU- -5'
1663 5' -64 NC_001347.2 + 80957 0.66 0.672876
Target:  5'- cCCCGuGgagcggacuacCACCgGCGCCG-CCGUugCCGu -3'
miRNA:   3'- -GGGC-C-----------GUGGgCGUGGCaGGCGugGGU- -5'
1663 5' -64 NC_001347.2 + 90374 0.66 0.672876
Target:  5'- aCCGGCACCUcgGCCGaUUCGCGCg-- -3'
miRNA:   3'- gGGCCGUGGGcgUGGC-AGGCGUGggu -5'
1663 5' -64 NC_001347.2 + 63093 0.66 0.672876
Target:  5'- gCUCGGCAagugCCGCcgugGCCG-CCGCGgCCGc -3'
miRNA:   3'- -GGGCCGUg---GGCG----UGGCaGGCGUgGGU- -5'
1663 5' -64 NC_001347.2 + 203543 0.66 0.671017
Target:  5'- aCCCGGUuuugcuccuuaCCGCGucccCCGUCCcCACCCc -3'
miRNA:   3'- -GGGCCGug---------GGCGU----GGCAGGcGUGGGu -5'
1663 5' -64 NC_001347.2 + 92932 0.66 0.663568
Target:  5'- -aCGGCAaagCCGC-CCGgcaGCACCCAg -3'
miRNA:   3'- ggGCCGUg--GGCGuGGCaggCGUGGGU- -5'
1663 5' -64 NC_001347.2 + 127532 0.66 0.663568
Target:  5'- aCCGGCACCCGguCUaUUucuucaaaagcgCGUGCCCAc -3'
miRNA:   3'- gGGCCGUGGGCguGGcAG------------GCGUGGGU- -5'
1663 5' -64 NC_001347.2 + 188862 0.66 0.663568
Target:  5'- gCUGGCGCCgGCGCUGccaUCCuCACgCCGa -3'
miRNA:   3'- gGGCCGUGGgCGUGGC---AGGcGUG-GGU- -5'
1663 5' -64 NC_001347.2 + 128041 0.66 0.663568
Target:  5'- aCCGcgaaCACCCGCuaggcuUUGUgCGCGCCCAa -3'
miRNA:   3'- gGGCc---GUGGGCGu-----GGCAgGCGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.