miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16630	5'	-49.2	NC_004156.1	+	143257	0.66	0.999526
	Target:  5'- -aCgUGCUGGGAGUGCGuCUCg---- -3' miRNA:   3'- gaGgACGAUUCUCACGUuGAGguuua -5'
16630	5'	-49.2	NC_004156.1	+	19684	0.66	0.999101
	Target:  5'- uCUUgaGCUGAGAGcGCAACgCCAu-- -3' miRNA:   3'- -GAGgaCGAUUCUCaCGUUGaGGUuua -5'
16630	5'	-49.2	NC_004156.1	+	210456	0.68	0.995484
	Target:  5'- gCUCCUGCUGcGGcUGCGGCcucugCCAGAUc -3' miRNA:   3'- -GAGGACGAUuCUcACGUUGa----GGUUUA- -5'
16630	5'	-49.2	NC_004156.1	+	130171	0.68	0.994728
	Target:  5'- aCUCuaCUGCUGAGGGUGUAcGCUCaCAc-- -3' miRNA:   3'- -GAG--GACGAUUCUCACGU-UGAG-GUuua -5'
16630	5'	-49.2	NC_004156.1	+	39622	0.72	0.959257
	Target:  5'- aCUCCUGUUAAGAGUaCAcCUCCu--- -3' miRNA:   3'- -GAGGACGAUUCUCAcGUuGAGGuuua -5'
16630	5'	-49.2	NC_004156.1	+	39656	0.76	0.815229
	Target:  5'- -aCCUaCcAAGAGUGCAACUCCAAAc -3' miRNA:   3'- gaGGAcGaUUCUCACGUUGAGGUUUa -5'
16630	5'	-49.2	NC_004156.1	+	39791	0.78	0.717128
	Target:  5'- -aCCUaCUAAGAGUGCAACUCCu--- -3' miRNA:   3'- gaGGAcGAUUCUCACGUUGAGGuuua -5'
16630	5'	-49.2	NC_004156.1	+	39757	1.08	0.018499
	Target:  5'- aCUCCUGCUAAGAGUGCAACUCCAAAUa -3' miRNA:   3'- -GAGGACGAUUCUCACGUUGAGGUUUA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home