miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16631 3' -51.4 NC_004156.1 + 135495 0.66 0.994479
Target:  5'- uACUACUAcUGGUAGUAgUGCUaGUa-- -3'
miRNA:   3'- -UGAUGAUcACCAUCAUgACGA-CGgua -5'
16631 3' -51.4 NC_004156.1 + 39302 0.68 0.98199
Target:  5'- cACUGCUAGUGuugcUGGcGCUGCUGUUGUc -3'
miRNA:   3'- -UGAUGAUCACc---AUCaUGACGACGGUA- -5'
16631 3' -51.4 NC_004156.1 + 123687 0.68 0.977471
Target:  5'- gGCUACcAGUGGUGGUAauaucaaUGCCAa -3'
miRNA:   3'- -UGAUGaUCACCAUCAUgacg---ACGGUa -5'
16631 3' -51.4 NC_004156.1 + 68221 0.69 0.955098
Target:  5'- aGCUGCUcugcgagucugcAGUGcUGGUACUGCUGgCAc -3'
miRNA:   3'- -UGAUGA------------UCACcAUCAUGACGACgGUa -5'
16631 3' -51.4 NC_004156.1 + 191086 0.7 0.937152
Target:  5'- cACUACUGGUaGUGGcACUGUgGCCAa -3'
miRNA:   3'- -UGAUGAUCAcCAUCaUGACGaCGGUa -5'
16631 3' -51.4 NC_004156.1 + 145446 0.71 0.915181
Target:  5'- gUUGUUGGUGGUGGUGCUGUUGUUg- -3'
miRNA:   3'- uGAUGAUCACCAUCAUGACGACGGua -5'
16631 3' -51.4 NC_004156.1 + 12294 0.72 0.882079
Target:  5'- gACUAUgGGUGGUAGaUGCUGUUGgCAg -3'
miRNA:   3'- -UGAUGaUCACCAUC-AUGACGACgGUa -5'
16631 3' -51.4 NC_004156.1 + 53597 0.72 0.882079
Target:  5'- uACUggcACUGGUGGUGGUGCUgguuuugauGCUGgCAUu -3'
miRNA:   3'- -UGA---UGAUCACCAUCAUGA---------CGACgGUA- -5'
16631 3' -51.4 NC_004156.1 + 39917 1.05 0.015753
Target:  5'- cACUACUAGUGGUAGUACUGCUGCCAUu -3'
miRNA:   3'- -UGAUGAUCACCAUCAUGACGACGGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.