miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16632 3' -47.1 NC_004156.1 + 120725 0.66 0.999983
Target:  5'- uGUGCAAAA-UAGAGUGUCuGAUgUUGGa -3'
miRNA:   3'- -UACGUUUUgGUCUCGUAG-CUGaAACC- -5'
16632 3' -47.1 NC_004156.1 + 142618 0.66 0.999983
Target:  5'- gAUGCAAuguguGCCAGAGUcuuUUGAU--UGGg -3'
miRNA:   3'- -UACGUUu----UGGUCUCGu--AGCUGaaACC- -5'
16632 3' -47.1 NC_004156.1 + 169406 0.66 0.999968
Target:  5'- -aGCGAGACCAcauagucuuGCAUCGcACUcUGGu -3'
miRNA:   3'- uaCGUUUUGGUcu-------CGUAGC-UGAaACC- -5'
16632 3' -47.1 NC_004156.1 + 106727 0.66 0.999968
Target:  5'- -aGCAagGAGCCGGcuGCAUCGGCa---- -3'
miRNA:   3'- uaCGU--UUUGGUCu-CGUAGCUGaaacc -5'
16632 3' -47.1 NC_004156.1 + 191123 0.66 0.999956
Target:  5'- -aGC-GAGCCAGAuugGCGUCGACa---- -3'
miRNA:   3'- uaCGuUUUGGUCU---CGUAGCUGaaacc -5'
16632 3' -47.1 NC_004156.1 + 69662 0.67 0.999942
Target:  5'- -cGCAGAGCCGGAGgCAgacACUcgGGa -3'
miRNA:   3'- uaCGUUUUGGUCUC-GUagcUGAaaCC- -5'
16632 3' -47.1 NC_004156.1 + 68562 0.67 0.999942
Target:  5'- -aGCGAGGCCaAGAGUGUCGAg----- -3'
miRNA:   3'- uaCGUUUUGG-UCUCGUAGCUgaaacc -5'
16632 3' -47.1 NC_004156.1 + 92708 0.67 0.999923
Target:  5'- uUGCG--ACCGGGGCAUCuGCg--GGu -3'
miRNA:   3'- uACGUuuUGGUCUCGUAGcUGaaaCC- -5'
16632 3' -47.1 NC_004156.1 + 35378 0.67 0.999923
Target:  5'- aGUGCGcAACCAuGAacuCAUCGAgUUUGGu -3'
miRNA:   3'- -UACGUuUUGGU-CUc--GUAGCUgAAACC- -5'
16632 3' -47.1 NC_004156.1 + 86678 0.67 0.999899
Target:  5'- -aGCcuGAACCAGAGCAacacUCGGCa---- -3'
miRNA:   3'- uaCGu-UUUGGUCUCGU----AGCUGaaacc -5'
16632 3' -47.1 NC_004156.1 + 220768 0.68 0.999647
Target:  5'- uUGCAuguaUAGAGCcucCGACUUUGGu -3'
miRNA:   3'- uACGUuuugGUCUCGua-GCUGAAACC- -5'
16632 3' -47.1 NC_004156.1 + 11415 0.69 0.999446
Target:  5'- -cGCGAAGCCAGA-CGUCaaaGCUUUGa -3'
miRNA:   3'- uaCGUUUUGGUCUcGUAGc--UGAAACc -5'
16632 3' -47.1 NC_004156.1 + 105111 0.69 0.998736
Target:  5'- uGUGguAAACUAGA-CGUCGACUUUa- -3'
miRNA:   3'- -UACguUUUGGUCUcGUAGCUGAAAcc -5'
16632 3' -47.1 NC_004156.1 + 220079 0.73 0.978369
Target:  5'- uUGuCGAucauGAUCAGAGCGUCGuccuCUUUGGg -3'
miRNA:   3'- uAC-GUU----UUGGUCUCGUAGCu---GAAACC- -5'
16632 3' -47.1 NC_004156.1 + 140411 0.74 0.967004
Target:  5'- gGUGCAGcguGACUuuaAGGGCAUCGgugACUUUGGu -3'
miRNA:   3'- -UACGUU---UUGG---UCUCGUAGC---UGAAACC- -5'
16632 3' -47.1 NC_004156.1 + 40822 1.11 0.021075
Target:  5'- gAUGCAAAACCAGAGCAUCGACUUUGGg -3'
miRNA:   3'- -UACGUUUUGGUCUCGUAGCUGAAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.