miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16632 5' -60.8 NC_004156.1 + 91771 0.66 0.759118
Target:  5'- uGGCCucGGAcUCGGAGUCgguGGCGUCCAGGa -3'
miRNA:   3'- -UCGG--UCUcGGUCUCGG---UCGCGGGUUC- -5'
16632 5' -60.8 NC_004156.1 + 151508 0.66 0.749904
Target:  5'- -aCC-GAGuCCGGgaaAGCUAGCGUCCAAGa -3'
miRNA:   3'- ucGGuCUC-GGUC---UCGGUCGCGGGUUC- -5'
16632 5' -60.8 NC_004156.1 + 148758 0.66 0.740594
Target:  5'- uAGCCc--GCCAGAGCCu-UGCCCAu- -3'
miRNA:   3'- -UCGGucuCGGUCUCGGucGCGGGUuc -5'
16632 5' -60.8 NC_004156.1 + 99463 0.67 0.721722
Target:  5'- cAGCCAaguacggaaucGAcGUCGGAGCCGGUGUCguGGa -3'
miRNA:   3'- -UCGGU-----------CU-CGGUCUCGGUCGCGGguUC- -5'
16632 5' -60.8 NC_004156.1 + 80949 0.67 0.712175
Target:  5'- uGGCCGGcGUUAGAGCCc-UGCCCAc- -3'
miRNA:   3'- -UCGGUCuCGGUCUCGGucGCGGGUuc -5'
16632 5' -60.8 NC_004156.1 + 224350 0.67 0.6929
Target:  5'- cAGCCAcagcaaaccGAGCCAauggcaaccGAGCCAGUGguaaCCGAGc -3'
miRNA:   3'- -UCGGU---------CUCGGU---------CUCGGUCGCg---GGUUC- -5'
16632 5' -60.8 NC_004156.1 + 69660 0.68 0.644031
Target:  5'- cGCgCAGAGCCGGAGgCAGaCaCUCGGGa -3'
miRNA:   3'- uCG-GUCUCGGUCUCgGUC-GcGGGUUC- -5'
16632 5' -60.8 NC_004156.1 + 149221 0.68 0.634202
Target:  5'- aAGCC---GCUAGAGguugCAGCGCCCGAGu -3'
miRNA:   3'- -UCGGucuCGGUCUCg---GUCGCGGGUUC- -5'
16632 5' -60.8 NC_004156.1 + 58773 0.68 0.624371
Target:  5'- -aCCGGAGCCAGAGCUaccaguaccagAGCuaCCAGu -3'
miRNA:   3'- ucGGUCUCGGUCUCGG-----------UCGcgGGUUc -5'
16632 5' -60.8 NC_004156.1 + 73098 0.69 0.585168
Target:  5'- gAGUuuUAGAGUCAGAGUagcguuUAGCGUCCGAGu -3'
miRNA:   3'- -UCG--GUCUCGGUCUCG------GUCGCGGGUUC- -5'
16632 5' -60.8 NC_004156.1 + 23882 0.7 0.517974
Target:  5'- cGCCAGAGUCAGAGUCAcCGaguuaCCAGa -3'
miRNA:   3'- uCGGUCUCGGUCUCGGUcGCg----GGUUc -5'
16632 5' -60.8 NC_004156.1 + 64928 0.76 0.249026
Target:  5'- cGGCCAGAGCCAGAuaC--CGCCCGAGc -3'
miRNA:   3'- -UCGGUCUCGGUCUcgGucGCGGGUUC- -5'
16632 5' -60.8 NC_004156.1 + 43527 0.79 0.150736
Target:  5'- gAGCCAGAGCCcucuaaAGAGCCAGaGCCCu-- -3'
miRNA:   3'- -UCGGUCUCGG------UCUCGGUCgCGGGuuc -5'
16632 5' -60.8 NC_004156.1 + 40788 1.07 0.001737
Target:  5'- gAGCCAGAGCCAGAGCCAGCGCCCAAGc -3'
miRNA:   3'- -UCGGUCUCGGUCUCGGUCGCGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.