miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16633 3' -44 NC_004156.1 + 53437 0.66 1
Target:  5'- ---aGCUUGUGCGGUucgUUUGAGgUGg- -3'
miRNA:   3'- uuuaCGGACACGUCA---AAAUUUgACau -5'
16633 3' -44 NC_004156.1 + 169532 0.66 1
Target:  5'- cGAGUGCCguacguguUGUGCGGUgaugUUAAACa--- -3'
miRNA:   3'- -UUUACGG--------ACACGUCAa---AAUUUGacau -5'
16633 3' -44 NC_004156.1 + 221299 0.67 0.999997
Target:  5'- uAAAUGUaaacucuaaaCUGUGguGUUUUAuaAACUGUGu -3'
miRNA:   3'- -UUUACG----------GACACguCAAAAU--UUGACAU- -5'
16633 3' -44 NC_004156.1 + 150649 0.69 0.999966
Target:  5'- -uGUGCCUGUcguugaccaagauGCAGcugaUUGAGCUGUAu -3'
miRNA:   3'- uuUACGGACA-------------CGUCaa--AAUUUGACAU- -5'
16633 3' -44 NC_004156.1 + 12111 0.7 0.999939
Target:  5'- uGAUGUgUGUGCGuguGUUUUGAaaACUGUAg -3'
miRNA:   3'- uUUACGgACACGU---CAAAAUU--UGACAU- -5'
16633 3' -44 NC_004156.1 + 56770 0.7 0.999939
Target:  5'- -uAUGCUUGUuCAGUUUUAGACcGUGu -3'
miRNA:   3'- uuUACGGACAcGUCAAAAUUUGaCAU- -5'
16633 3' -44 NC_004156.1 + 57060 1.05 0.078807
Target:  5'- uAAAUGCCUGUGCAGUUUUAAACUGUAc -3'
miRNA:   3'- -UUUACGGACACGUCAAAAUUUGACAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.