Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 209821 | 0.69 | 0.999983 |
Target: 5'- cGCACAUGGUCggauugucauACUuGGACAGGg -3' miRNA: 3'- aUGUGUGCCAGauuu------UGA-CUUGUUCg -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 7124 | 0.69 | 0.999971 |
Target: 5'- aACACAacuCGGgCUGGuccaauCUGGACGAGCu -3' miRNA: 3'- aUGUGU---GCCaGAUUuu----GACUUGUUCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 130830 | 0.71 | 0.999841 |
Target: 5'- cGgACGCGGUCcAAAACUGAuacuGCg -3' miRNA: 3'- aUgUGUGCCAGaUUUUGACUuguuCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 190813 | 0.71 | 0.999578 |
Target: 5'- ----aACGuGUCUGAGAUUGAGCAacGGCg -3' miRNA: 3'- augugUGC-CAGAUUUUGACUUGU--UCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 96920 | 0.71 | 0.999578 |
Target: 5'- uUGCAUACGGUCggu-ACgacGAugAGGCu -3' miRNA: 3'- -AUGUGUGCCAGauuuUGa--CUugUUCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 147345 | 0.72 | 0.99947 |
Target: 5'- cUAUugAUGGUCUcgcuAUUGAGCAAGUu -3' miRNA: 3'- -AUGugUGCCAGAuuu-UGACUUGUUCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 56796 | 0.72 | 0.99947 |
Target: 5'- gUACGCuAUGGUacaguUUAAAACUGcACAGGCa -3' miRNA: 3'- -AUGUG-UGCCA-----GAUUUUGACuUGUUCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 172852 | 0.72 | 0.99934 |
Target: 5'- aUGCAC-CGGUCguAAACUGcAACAcuGGCa -3' miRNA: 3'- -AUGUGuGCCAGauUUUGAC-UUGU--UCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 164650 | 0.74 | 0.994779 |
Target: 5'- gUACGCAUGGUaUUGAGACgcacguacuuggGAACGAGCc -3' miRNA: 3'- -AUGUGUGCCA-GAUUUUGa-----------CUUGUUCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 158143 | 0.76 | 0.989379 |
Target: 5'- cGCGCGCGuGUCUAAAACUuGGuaaucaaACAAGUg -3' miRNA: 3'- aUGUGUGC-CAGAUUUUGA-CU-------UGUUCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 10366 | 0.78 | 0.969546 |
Target: 5'- --uGCGCGGUUUAAuACUGGGCGguGGCa -3' miRNA: 3'- augUGUGCCAGAUUuUGACUUGU--UCG- -5' |
|||||||
16633 | 5' | -44.6 | NC_004156.1 | + | 57026 | 1.13 | 0.030048 |
Target: 5'- gUACACACGGUCUAAAACUGAACAAGCa -3' miRNA: 3'- -AUGUGUGCCAGAUUUUGACUUGUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home