miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16634 5' -52.2 NC_004156.1 + 58614 0.82 0.352796
Target:  5'- cGAUGCUGAagcagcaaagcgcaaGGCAgaugaggacGCCGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACU---------------UCGU---------CGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58440 0.82 0.326204
Target:  5'- uGAUGCUGAAG-AGCCgaaGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACUUCgUCGG---CGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58042 0.83 0.296861
Target:  5'- --gGCUGAAGCuGCCGCCAAACGc-- -3'
miRNA:   3'- cuaCGACUUCGuCGGCGGUUUGCauu -5'
16634 5' -52.2 NC_004156.1 + 57523 0.85 0.226817
Target:  5'- cGAUGCUGAAGCAGCCGaacgaAAACGUAu -3'
miRNA:   3'- -CUACGACUUCGUCGGCgg---UUUGCAUu -5'
16634 5' -52.2 NC_004156.1 + 57604 0.85 0.226817
Target:  5'- cGAUGCUGAAGCAGCCGaacgaAAACGUAu -3'
miRNA:   3'- -CUACGACUUCGUCGGCgg---UUUGCAUu -5'
16634 5' -52.2 NC_004156.1 + 58105 0.87 0.185102
Target:  5'- --gGCUGAAGCAGCCgaaGCCAAACGUAa -3'
miRNA:   3'- cuaCGACUUCGUCGG---CGGUUUGCAUu -5'
16634 5' -52.2 NC_004156.1 + 57982 0.87 0.180391
Target:  5'- --gGCUGAAGCuGCCGCUAAACGUAAa -3'
miRNA:   3'- cuaCGACUUCGuCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58255 0.87 0.175787
Target:  5'- --gGCUGAAGCuGCUGCCAAACGUAAa -3'
miRNA:   3'- cuaCGACUUCGuCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58078 0.89 0.135231
Target:  5'- --aGCUGAgauugaAGCAGCCGCCAAACGUAAa -3'
miRNA:   3'- cuaCGACU------UCGUCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58195 0.91 0.097991
Target:  5'- --gGCUGAAGCuGCCGCCAAACGUAAa -3'
miRNA:   3'- cuaCGACUUCGuCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58533 0.95 0.05353
Target:  5'- uGAUGCUGAAGCAGCCgaaGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACUUCGUCGG---CGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 58500 0.96 0.049244
Target:  5'- cGAUGCUGAAGCAGCCgaaGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACUUCGUCGG---CGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 57871 1.07 0.010148
Target:  5'- cGAUGCUGAAGCAGCCGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACUUCGUCGGCGGUUUGCAUU- -5'
16634 5' -52.2 NC_004156.1 + 57928 1.07 0.010148
Target:  5'- cGAUGCUGAAGCAGCCGCCAAACGUAAa -3'
miRNA:   3'- -CUACGACUUCGUCGGCGGUUUGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.