miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16635 3' -54.5 NC_004156.1 + 3281 0.68 0.939409
Target:  5'- aGUGAAGcCGGuGGCgguAGUagaauUGCCGCc -3'
miRNA:   3'- gCAUUUC-GCCuCCGacuUCG-----ACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 41313 0.67 0.963353
Target:  5'- aGUGGAGgauuCGGAGGCgguuucgGAGGCucaggaggaggUGCCGg -3'
miRNA:   3'- gCAUUUC----GCCUCCGa------CUUCG-----------ACGGCg -5'
16635 3' -54.5 NC_004156.1 + 55581 0.66 0.972422
Target:  5'- --gAAAGUGGAcuagagguuuauGGCU--AGCUGCUGCc -3'
miRNA:   3'- gcaUUUCGCCU------------CCGAcuUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 57532 0.66 0.972422
Target:  5'- aCGcAAAGCcGAuGCUGAAGCaGCCGa -3'
miRNA:   3'- -GCaUUUCGcCUcCGACUUCGaCGGCg -5'
16635 3' -54.5 NC_004156.1 + 57613 0.66 0.972422
Target:  5'- aCGcAAAGCcGAuGCUGAAGCaGCCGa -3'
miRNA:   3'- -GCaUUUCGcCUcCGACUUCGaCGGCg -5'
16635 3' -54.5 NC_004156.1 + 57640 0.86 0.172603
Target:  5'- aCGcAAAGCGGAGGCUGAGGCaGCCa- -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGaCGGcg -5'
16635 3' -54.5 NC_004156.1 + 57670 1.01 0.019155
Target:  5'- aCGUAAAGCcGAGGCUGAAGCUGCCGCu -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 57733 0.94 0.054947
Target:  5'- aCGaAAAGCGGAGGCUGAAGCUGCUGa -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCg -5'
16635 3' -54.5 NC_004156.1 + 57760 0.84 0.226154
Target:  5'- aCGUAAAGCuGAGGCUGAGGCaGCCa- -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGaCGGcg -5'
16635 3' -54.5 NC_004156.1 + 57823 0.94 0.054947
Target:  5'- aCGcAAAGCGGAGGCUGAAGCUGCUGa -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCg -5'
16635 3' -54.5 NC_004156.1 + 57850 0.84 0.226154
Target:  5'- aCGUAAAGCuGAGGCUGAGGCaGCCa- -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGaCGGcg -5'
16635 3' -54.5 NC_004156.1 + 57907 0.79 0.413
Target:  5'- aCGUAAAGCuGAGGCUGAGGCagcaaaacgaaagGCCGa -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGa------------CGGCg -5'
16635 3' -54.5 NC_004156.1 + 57946 0.66 0.977488
Target:  5'- aCGUuuGGCGGcAGcuucagccuccGCuuUGAguuuGGCUGCCGCu -3'
miRNA:   3'- -GCAuuUCGCC-UC-----------CG--ACU----UCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 57964 0.78 0.430414
Target:  5'- aCGUAAAGCcGAGGCUGAAGCagcaaaacgaaagGCCGa -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGa------------CGGCg -5'
16635 3' -54.5 NC_004156.1 + 57994 1.04 0.01238
Target:  5'- aCGcAAAGCGGAGGCUGAAGCUGCCGCu -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58024 1.04 0.01238
Target:  5'- aCGcAAAGCGGAGGCUGAAGCUGCCGCu -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58054 1.12 0.003918
Target:  5'- aCGUAAAGCGGAGGCUGAAGCUGCCGCc -3'
miRNA:   3'- -GCAUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58084 0.76 0.576649
Target:  5'- aCGUAAAGCuGAGaUUGAAGCaGCCGCc -3'
miRNA:   3'- -GCAUUUCGcCUCcGACUUCGaCGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58117 0.89 0.103564
Target:  5'- aCGcAAAGCGGAGGCUGAAGCaGCCGa -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGaCGGCg -5'
16635 3' -54.5 NC_004156.1 + 58144 1.02 0.015402
Target:  5'- --cAAAGCGGAGGCUGAAGCUGCCGCu -3'
miRNA:   3'- gcaUUUCGCCUCCGACUUCGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.