Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 85642 | 0.74 | 0.647243 |
Target: 5'- aCGUAAAGCgGGAGGCuccuuUGAAGCgGuaGCg -3' miRNA: 3'- -GCAUUUCG-CCUCCG-----ACUUCGaCggCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 3281 | 0.68 | 0.939409 |
Target: 5'- aGUGAAGcCGGuGGCgguAGUagaauUGCCGCc -3' miRNA: 3'- gCAUUUC-GCCuCCGacuUCG-----ACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 55581 | 0.66 | 0.972422 |
Target: 5'- --gAAAGUGGAcuagagguuuauGGCU--AGCUGCUGCc -3' miRNA: 3'- gcaUUUCGCCU------------CCGAcuUCGACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 57946 | 0.66 | 0.977488 |
Target: 5'- aCGUuuGGCGGcAGcuucagccuccGCuuUGAguuuGGCUGCCGCu -3' miRNA: 3'- -GCAuuUCGCC-UC-----------CG--ACU----UCGACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58417 | 0.92 | 0.067996 |
Target: 5'- aCGUAAAGCGGAGGCUGAGGCgGCaGCc -3' miRNA: 3'- -GCAUUUCGCCUCCGACUUCGaCGgCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58387 | 0.89 | 0.103564 |
Target: 5'- aCGcAAAGCGGAGGCUGAAGCaGCCGa -3' miRNA: 3'- -GCaUUUCGCCUCCGACUUCGaCGGCg -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58117 | 0.89 | 0.103564 |
Target: 5'- aCGcAAAGCGGAGGCUGAAGCaGCCGa -3' miRNA: 3'- -GCaUUUCGCCUCCGACUUCGaCGGCg -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 57640 | 0.86 | 0.172603 |
Target: 5'- aCGcAAAGCGGAGGCUGAGGCaGCCa- -3' miRNA: 3'- -GCaUUUCGCCUCCGACUUCGaCGGcg -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 57850 | 0.84 | 0.226154 |
Target: 5'- aCGUAAAGCuGAGGCUGAGGCaGCCa- -3' miRNA: 3'- -GCAUUUCGcCUCCGACUUCGaCGGcg -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 57760 | 0.84 | 0.226154 |
Target: 5'- aCGUAAAGCuGAGGCUGAGGCaGCCa- -3' miRNA: 3'- -GCAUUUCGcCUCCGACUUCGaCGGcg -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58237 | 0.82 | 0.299944 |
Target: 5'- aCGUAAAGCcGAGGCUGAAGCgGCaGCc -3' miRNA: 3'- -GCAUUUCGcCUCCGACUUCGaCGgCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 57733 | 0.94 | 0.054947 |
Target: 5'- aCGaAAAGCGGAGGCUGAAGCUGCUGa -3' miRNA: 3'- -GCaUUUCGCCUCCGACUUCGACGGCg -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 57823 | 0.94 | 0.054947 |
Target: 5'- aCGcAAAGCGGAGGCUGAAGCUGCUGa -3' miRNA: 3'- -GCaUUUCGCCUCCGACUUCGACGGCg -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58267 | 0.99 | 0.027272 |
Target: 5'- gCGcAAAGCGGAGGCUGAAGCUGCUGCc -3' miRNA: 3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 57670 | 1.01 | 0.019155 |
Target: 5'- aCGUAAAGCcGAGGCUGAAGCUGCCGCu -3' miRNA: 3'- -GCAUUUCGcCUCCGACUUCGACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58204 | 1.02 | 0.017177 |
Target: 5'- --cAAAGCGGAGGCUGAAGCUGCCGCc -3' miRNA: 3'- gcaUUUCGCCUCCGACUUCGACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58144 | 1.02 | 0.015402 |
Target: 5'- --cAAAGCGGAGGCUGAAGCUGCCGCu -3' miRNA: 3'- gcaUUUCGCCUCCGACUUCGACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 57994 | 1.04 | 0.01238 |
Target: 5'- aCGcAAAGCGGAGGCUGAAGCUGCCGCu -3' miRNA: 3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58024 | 1.04 | 0.01238 |
Target: 5'- aCGcAAAGCGGAGGCUGAAGCUGCCGCu -3' miRNA: 3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5' |
|||||||
16635 | 3' | -54.5 | NC_004156.1 | + | 58542 | 0.66 | 0.979747 |
Target: 5'- nCGaAAGGCuGAuGCUGAAGCaGCCGa -3' miRNA: 3'- -GCaUUUCGcCUcCGACUUCGaCGGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home