miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16635 3' -54.5 NC_004156.1 + 57850 0.84 0.226154
Target:  5'- aCGUAAAGCuGAGGCUGAGGCaGCCa- -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGaCGGcg -5'
16635 3' -54.5 NC_004156.1 + 57760 0.84 0.226154
Target:  5'- aCGUAAAGCuGAGGCUGAGGCaGCCa- -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGaCGGcg -5'
16635 3' -54.5 NC_004156.1 + 57640 0.86 0.172603
Target:  5'- aCGcAAAGCGGAGGCUGAGGCaGCCa- -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGaCGGcg -5'
16635 3' -54.5 NC_004156.1 + 58117 0.89 0.103564
Target:  5'- aCGcAAAGCGGAGGCUGAAGCaGCCGa -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGaCGGCg -5'
16635 3' -54.5 NC_004156.1 + 58387 0.89 0.103564
Target:  5'- aCGcAAAGCGGAGGCUGAAGCaGCCGa -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGaCGGCg -5'
16635 3' -54.5 NC_004156.1 + 58417 0.92 0.067996
Target:  5'- aCGUAAAGCGGAGGCUGAGGCgGCaGCc -3'
miRNA:   3'- -GCAUUUCGCCUCCGACUUCGaCGgCG- -5'
16635 3' -54.5 NC_004156.1 + 57823 0.94 0.054947
Target:  5'- aCGcAAAGCGGAGGCUGAAGCUGCUGa -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCg -5'
16635 3' -54.5 NC_004156.1 + 57733 0.94 0.054947
Target:  5'- aCGaAAAGCGGAGGCUGAAGCUGCUGa -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCg -5'
16635 3' -54.5 NC_004156.1 + 58267 0.99 0.027272
Target:  5'- gCGcAAAGCGGAGGCUGAAGCUGCUGCc -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 57670 1.01 0.019155
Target:  5'- aCGUAAAGCcGAGGCUGAAGCUGCCGCu -3'
miRNA:   3'- -GCAUUUCGcCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58204 1.02 0.017177
Target:  5'- --cAAAGCGGAGGCUGAAGCUGCCGCc -3'
miRNA:   3'- gcaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58144 1.02 0.015402
Target:  5'- --cAAAGCGGAGGCUGAAGCUGCCGCu -3'
miRNA:   3'- gcaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 57994 1.04 0.01238
Target:  5'- aCGcAAAGCGGAGGCUGAAGCUGCCGCu -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58024 1.04 0.01238
Target:  5'- aCGcAAAGCGGAGGCUGAAGCUGCCGCu -3'
miRNA:   3'- -GCaUUUCGCCUCCGACUUCGACGGCG- -5'
16635 3' -54.5 NC_004156.1 + 58054 1.12 0.003918
Target:  5'- aCGUAAAGCGGAGGCUGAAGCUGCCGCc -3'
miRNA:   3'- -GCAUUUCGCCUCCGACUUCGACGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.