miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16635 5' -56.9 NC_004156.1 + 58173 0.66 0.860397
Target:  5'- aAAGCcGAGGCUGAAGCgGCaGCcAAAc -3'
miRNA:   3'- -UUCGcCUCCGACUUCGaCGgCGaUUU- -5'
16635 5' -56.9 NC_004156.1 + 58233 0.66 0.860397
Target:  5'- aAAGCcGAGGCUGAAGCgGCaGCcAAAc -3'
miRNA:   3'- -UUCGcCUCCGACUUCGaCGgCGaUUU- -5'
16635 5' -56.9 NC_004156.1 + 58290 0.67 0.819544
Target:  5'- aAAGCcGAGGCUGAAGCaGCaaaGCg--- -3'
miRNA:   3'- -UUCGcCUCCGACUUCGaCGg--CGauuu -5'
16635 5' -56.9 NC_004156.1 + 57756 0.68 0.792912
Target:  5'- aAAGCuGAGGCUGAGGCaGCCa----- -3'
miRNA:   3'- -UUCGcCUCCGACUUCGaCGGcgauuu -5'
16635 5' -56.9 NC_004156.1 + 57846 0.68 0.792912
Target:  5'- aAAGCuGAGGCUGAGGCaGCCa----- -3'
miRNA:   3'- -UUCGcCUCCGACUUCGaCGGcgauuu -5'
16635 5' -56.9 NC_004156.1 + 57960 0.68 0.78742
Target:  5'- aAAGCcGAGGCUGAAGCaGCaaaacgaaaggccgaUGCUGAAg -3'
miRNA:   3'- -UUCGcCUCCGACUUCGaCG---------------GCGAUUU- -5'
16635 5' -56.9 NC_004156.1 + 57903 0.68 0.768759
Target:  5'- aAAGCuGAGGCUGAGGCaGCaaaacgaaaggccgaUGCUGAAg -3'
miRNA:   3'- -UUCGcCUCCGACUUCGaCG---------------GCGAUUU- -5'
16635 5' -56.9 NC_004156.1 + 191477 0.7 0.69603
Target:  5'- --cCGGAGGUggGuAAGCUGUCGCUGGAc -3'
miRNA:   3'- uucGCCUCCGa-C-UUCGACGGCGAUUU- -5'
16635 5' -56.9 NC_004156.1 + 58413 0.77 0.315318
Target:  5'- aAAGCGGAGGCUGAGGCgGCaGCcAAAc -3'
miRNA:   3'- -UUCGCCUCCGACUUCGaCGgCGaUUU- -5'
16635 5' -56.9 NC_004156.1 + 58113 0.82 0.160717
Target:  5'- aAAGCGGAGGCUGAAGCaGCCgaagccaaacguaaaGCUGAGa -3'
miRNA:   3'- -UUCGCCUCCGACUUCGaCGG---------------CGAUUU- -5'
16635 5' -56.9 NC_004156.1 + 57636 0.82 0.160717
Target:  5'- aAAGCGGAGGCUGAGGCaGCCaaacgcaaagccgauGCUGAAg -3'
miRNA:   3'- -UUCGCCUCCGACUUCGaCGG---------------CGAUUU- -5'
16635 5' -56.9 NC_004156.1 + 58383 0.82 0.159081
Target:  5'- aAAGCGGAGGCUGAAGCaGCCGaacgAAAa -3'
miRNA:   3'- -UUCGCCUCCGACUUCGaCGGCga--UUU- -5'
16635 5' -56.9 NC_004156.1 + 57819 0.86 0.084804
Target:  5'- aAAGCGGAGGCUGAAGCUGCUGaacgAAAa -3'
miRNA:   3'- -UUCGCCUCCGACUUCGACGGCga--UUU- -5'
16635 5' -56.9 NC_004156.1 + 57729 0.86 0.084804
Target:  5'- aAAGCGGAGGCUGAAGCUGCUGaacgAAAa -3'
miRNA:   3'- -UUCGCCUCCGACUUCGACGGCga--UUU- -5'
16635 5' -56.9 NC_004156.1 + 58263 0.91 0.036588
Target:  5'- aAAGCGGAGGCUGAAGCUGCUGCcAAAc -3'
miRNA:   3'- -UUCGCCUCCGACUUCGACGGCGaUUU- -5'
16635 5' -56.9 NC_004156.1 + 57666 0.92 0.031895
Target:  5'- aAAGCcGAGGCUGAAGCUGCCGCUAAAc -3'
miRNA:   3'- -UUCGcCUCCGACUUCGACGGCGAUUU- -5'
16635 5' -56.9 NC_004156.1 + 58050 0.95 0.019958
Target:  5'- aAAGCGGAGGCUGAAGCUGCCGCcAAAc -3'
miRNA:   3'- -UUCGCCUCCGACUUCGACGGCGaUUU- -5'
16635 5' -56.9 NC_004156.1 + 58203 0.95 0.019958
Target:  5'- aAAGCGGAGGCUGAAGCUGCCGCcAAAc -3'
miRNA:   3'- -UUCGCCUCCGACUUCGACGGCGaUUU- -5'
16635 5' -56.9 NC_004156.1 + 57990 1.03 0.005718
Target:  5'- aAAGCGGAGGCUGAAGCUGCCGCUAAAc -3'
miRNA:   3'- -UUCGCCUCCGACUUCGACGGCGAUUU- -5'
16635 5' -56.9 NC_004156.1 + 58020 1.03 0.005718
Target:  5'- aAAGCGGAGGCUGAAGCUGCCGCUAAAc -3'
miRNA:   3'- -UUCGCCUCCGACUUCGACGGCGAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.