miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16637 5' -49.7 NC_004156.1 + 2068 0.7 0.989293
Target:  5'- gCGUUGGACGCGAucgauucuacaCCCGAGUCa-- -3'
miRNA:   3'- gGCAACUUGCGUUuc---------GGGUUCAGagc -5'
16637 5' -49.7 NC_004156.1 + 25480 0.66 0.99958
Target:  5'- aCGUUaAGCGac-AGCCCGAGUCaUCu -3'
miRNA:   3'- gGCAAcUUGCguuUCGGGUUCAG-AGc -5'
16637 5' -49.7 NC_004156.1 + 33239 0.67 0.999358
Target:  5'- --uUUGAAU-CAAAGCCCGaauccuugaccgAGUCUCGg -3'
miRNA:   3'- ggcAACUUGcGUUUCGGGU------------UCAGAGC- -5'
16637 5' -49.7 NC_004156.1 + 34988 0.67 0.999213
Target:  5'- aUCGUUGGccuugguUGCcGAGUCCAAGUCUa- -3'
miRNA:   3'- -GGCAACUu------GCGuUUCGGGUUCAGAgc -5'
16637 5' -49.7 NC_004156.1 + 37039 0.66 0.999571
Target:  5'- gUCGUUucucuugaauaugGAACGUAAacGGCUCAAGgagCUCGu -3'
miRNA:   3'- -GGCAA-------------CUUGCGUU--UCGGGUUCa--GAGC- -5'
16637 5' -49.7 NC_004156.1 + 37858 0.76 0.860003
Target:  5'- uUGUUGuGCGCAAAcGCCUcacuaGAGUCUCGg -3'
miRNA:   3'- gGCAACuUGCGUUU-CGGG-----UUCAGAGC- -5'
16637 5' -49.7 NC_004156.1 + 67580 1.12 0.012868
Target:  5'- aCCGUUGAACGCAAAGCCCAAGUCUCGu -3'
miRNA:   3'- -GGCAACUUGCGUUUCGGGUUCAGAGC- -5'
16637 5' -49.7 NC_004156.1 + 102843 0.66 0.999663
Target:  5'- gCUGagGAGCGCAAA-CCCGAGgagUCGg -3'
miRNA:   3'- -GGCaaCUUGCGUUUcGGGUUCag-AGC- -5'
16637 5' -49.7 NC_004156.1 + 109158 0.74 0.914054
Target:  5'- aCUGUUGAccgAUGCcggugccgagaguAGAGCCCcAGUCUCGg -3'
miRNA:   3'- -GGCAACU---UGCG-------------UUUCGGGuUCAGAGC- -5'
16637 5' -49.7 NC_004156.1 + 145900 0.67 0.999213
Target:  5'- aCCG-UGAACGCAccaAGGgUCAGGUCa-- -3'
miRNA:   3'- -GGCaACUUGCGU---UUCgGGUUCAGagc -5'
16637 5' -49.7 NC_004156.1 + 149219 0.7 0.986612
Target:  5'- gCCGcuaGAGguUGCAgcGCCCGAGUUUCGa -3'
miRNA:   3'- -GGCaa-CUU--GCGUuuCGGGUUCAGAGC- -5'
16637 5' -49.7 NC_004156.1 + 158760 0.71 0.981035
Target:  5'- uCCGgcGGugGCA---CCCGAGUCUCc -3'
miRNA:   3'- -GGCaaCUugCGUuucGGGUUCAGAGc -5'
16637 5' -49.7 NC_004156.1 + 194983 0.67 0.999213
Target:  5'- aUCGUgcaaaGCAAAGCUCAAGUCa-- -3'
miRNA:   3'- -GGCAacuugCGUUUCGGGUUCAGagc -5'
16637 5' -49.7 NC_004156.1 + 208683 0.78 0.754398
Target:  5'- aCGUUGAGCGU--GGCCUcuGUCUCGu -3'
miRNA:   3'- gGCAACUUGCGuuUCGGGuuCAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.