miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1664 3' -52 NC_001347.2 + 135844 0.66 0.997184
Target:  5'- --gGAGCAGCgaGGGa-UCcCGGGCCg -3'
miRNA:   3'- guaCUUGUUGgaCCCacAGaGCCUGG- -5'
1664 3' -52 NC_001347.2 + 193832 0.66 0.996695
Target:  5'- --cGcGCGAUCUGGGgcUCUCGG-CCu -3'
miRNA:   3'- guaCuUGUUGGACCCacAGAGCCuGG- -5'
1664 3' -52 NC_001347.2 + 155215 0.66 0.994792
Target:  5'- --cGAguGCca-CUGGGUGUaCUCGGugCu -3'
miRNA:   3'- guaCU--UGuugGACCCACA-GAGCCugG- -5'
1664 3' -52 NC_001347.2 + 182616 0.66 0.994792
Target:  5'- cCAUGAAgcGCUUGGGUGUa--GGcCCg -3'
miRNA:   3'- -GUACUUguUGGACCCACAgagCCuGG- -5'
1664 3' -52 NC_001347.2 + 14011 0.67 0.991761
Target:  5'- cUAUcGGCGGCCgGGGcUGUgaaccgcucaguggCUCGGACCg -3'
miRNA:   3'- -GUAcUUGUUGGaCCC-ACA--------------GAGCCUGG- -5'
1664 3' -52 NC_001347.2 + 1334 0.69 0.968954
Target:  5'- gAUGAACGGCgUGGGcGcgaCGGACCu -3'
miRNA:   3'- gUACUUGUUGgACCCaCagaGCCUGG- -5'
1664 3' -52 NC_001347.2 + 140854 0.7 0.96587
Target:  5'- uGUGGACGAcgaggcCCUGGGUuucGUUUCGGAg- -3'
miRNA:   3'- gUACUUGUU------GGACCCA---CAGAGCCUgg -5'
1664 3' -52 NC_001347.2 + 169837 0.7 0.955339
Target:  5'- --gGAACAGC--GGGUGUCcUCGGugCc -3'
miRNA:   3'- guaCUUGUUGgaCCCACAG-AGCCugG- -5'
1664 3' -52 NC_001347.2 + 145554 0.7 0.955339
Target:  5'- -cUGAcggccgccGCGGCCgucucGGGUGUCUucagggagcCGGACCg -3'
miRNA:   3'- guACU--------UGUUGGa----CCCACAGA---------GCCUGG- -5'
1664 3' -52 NC_001347.2 + 178493 0.71 0.928161
Target:  5'- cUAUGGACGACCUGGuGaugGUCUuccaccagcUGGACUa -3'
miRNA:   3'- -GUACUUGUUGGACC-Ca--CAGA---------GCCUGG- -5'
1664 3' -52 NC_001347.2 + 53954 0.72 0.917225
Target:  5'- uCAUGAauccACAGgCUGcGGUGUC-CGGACg -3'
miRNA:   3'- -GUACU----UGUUgGAC-CCACAGaGCCUGg -5'
1664 3' -52 NC_001347.2 + 130214 0.72 0.917225
Target:  5'- cCAUGggUAccuACCgcugcGGcGcUGUCUCGGACCu -3'
miRNA:   3'- -GUACuuGU---UGGa----CC-C-ACAGAGCCUGG- -5'
1664 3' -52 NC_001347.2 + 171323 0.72 0.905349
Target:  5'- -uUGGGCGGCCUGucucccGGcgGcUCUCGGACCu -3'
miRNA:   3'- guACUUGUUGGAC------CCa-C-AGAGCCUGG- -5'
1664 3' -52 NC_001347.2 + 147857 0.73 0.871662
Target:  5'- uCAUGAGCGGCCUGGGcGcCgCGGgaaagGCCg -3'
miRNA:   3'- -GUACUUGUUGGACCCaCaGaGCC-----UGG- -5'
1664 3' -52 NC_001347.2 + 201638 0.74 0.815799
Target:  5'- -cUGAACuguACCUGGGcGcCUCGGGCg -3'
miRNA:   3'- guACUUGu--UGGACCCaCaGAGCCUGg -5'
1664 3' -52 NC_001347.2 + 84361 0.78 0.629171
Target:  5'- uGUGAaaucuucuuuuggcGCGgaguCCUGGGUGUgUCGGGCCg -3'
miRNA:   3'- gUACU--------------UGUu---GGACCCACAgAGCCUGG- -5'
1664 3' -52 NC_001347.2 + 35605 0.81 0.46478
Target:  5'- cCAUGAACAaucucuggaaaGCCUGGGUGggucUUUGGACCu -3'
miRNA:   3'- -GUACUUGU-----------UGGACCCACa---GAGCCUGG- -5'
1664 3' -52 NC_001347.2 + 114296 1.13 0.00632
Target:  5'- cCAUGAACAACCUGGGUGUCUCGGACCa -3'
miRNA:   3'- -GUACUUGUUGGACCCACAGAGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.