miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1664 5' -54 NC_001347.2 + 228698 0.66 0.97921
Target:  5'- -aAGUCGCuu-GCGCUGuCGGCCCa-- -3'
miRNA:   3'- aaUCAGCGuucUGCGGC-GUUGGGaug -5'
1664 5' -54 NC_001347.2 + 165718 0.66 0.97921
Target:  5'- -cGGUCuGCAGGACGgCGCucguuccACCCaggUGCa -3'
miRNA:   3'- aaUCAG-CGUUCUGCgGCGu------UGGG---AUG- -5'
1664 5' -54 NC_001347.2 + 158999 0.66 0.97921
Target:  5'- --uGUCGCGcacccGGCGCUGaCAGCCCa-- -3'
miRNA:   3'- aauCAGCGUu----CUGCGGC-GUUGGGaug -5'
1664 5' -54 NC_001347.2 + 201409 0.66 0.97921
Target:  5'- cUGGagGCcuccuAAGACGUCGCGACCgUGg -3'
miRNA:   3'- aAUCagCG-----UUCUGCGGCGUUGGgAUg -5'
1664 5' -54 NC_001347.2 + 161525 0.66 0.978527
Target:  5'- -aGGUCGCcuagcgucugacccAAG-CGCUGCAACaguuCCUGCa -3'
miRNA:   3'- aaUCAGCG--------------UUCuGCGGCGUUG----GGAUG- -5'
1664 5' -54 NC_001347.2 + 191210 0.66 0.97687
Target:  5'- --cGcCGCucGGAgcacCGCCGCAGCCCgGCu -3'
miRNA:   3'- aauCaGCGu-UCU----GCGGCGUUGGGaUG- -5'
1664 5' -54 NC_001347.2 + 35288 0.66 0.974343
Target:  5'- -aGGUCaGCGugucugauaccGGGCGCCGgGACUCUGg -3'
miRNA:   3'- aaUCAG-CGU-----------UCUGCGGCgUUGGGAUg -5'
1664 5' -54 NC_001347.2 + 76632 0.66 0.974343
Target:  5'- -cGGcCGCGgcGGAgGCCgaaGCGGCCUUGCg -3'
miRNA:   3'- aaUCaGCGU--UCUgCGG---CGUUGGGAUG- -5'
1664 5' -54 NC_001347.2 + 135204 0.66 0.974343
Target:  5'- -gGGUC-CGAGGCGCCG--ACCCcgGCu -3'
miRNA:   3'- aaUCAGcGUUCUGCGGCguUGGGa-UG- -5'
1664 5' -54 NC_001347.2 + 108290 0.66 0.97162
Target:  5'- uUUAGUCGCGGcGAuacgccggugcUGCCGCAcgagacgcgACuCCUGCa -3'
miRNA:   3'- -AAUCAGCGUU-CU-----------GCGGCGU---------UG-GGAUG- -5'
1664 5' -54 NC_001347.2 + 85756 0.66 0.97162
Target:  5'- -cGGUUccaccaGCAAGguGCGaCCGCuACCCUGCu -3'
miRNA:   3'- aaUCAG------CGUUC--UGC-GGCGuUGGGAUG- -5'
1664 5' -54 NC_001347.2 + 130710 0.66 0.97162
Target:  5'- --cGUCGUcuacAAGACGaCCGCGGuCCCUcCa -3'
miRNA:   3'- aauCAGCG----UUCUGC-GGCGUU-GGGAuG- -5'
1664 5' -54 NC_001347.2 + 68231 0.66 0.968696
Target:  5'- gUAGaCGC--GGCGCCGCAACCaCcGCc -3'
miRNA:   3'- aAUCaGCGuuCUGCGGCGUUGG-GaUG- -5'
1664 5' -54 NC_001347.2 + 208051 0.66 0.968696
Target:  5'- -gAGUCGCGGcguucguuGGCGCCGCuGCCg--- -3'
miRNA:   3'- aaUCAGCGUU--------CUGCGGCGuUGGgaug -5'
1664 5' -54 NC_001347.2 + 200615 0.67 0.965563
Target:  5'- --cGUCGgGcugcGCGCCGUcgaGACCCUGCa -3'
miRNA:   3'- aauCAGCgUuc--UGCGGCG---UUGGGAUG- -5'
1664 5' -54 NC_001347.2 + 113805 0.67 0.965563
Target:  5'- --cGUCGC-GGAcgcucugcauCGCCGCAACguguCCUACa -3'
miRNA:   3'- aauCAGCGuUCU----------GCGGCGUUG----GGAUG- -5'
1664 5' -54 NC_001347.2 + 173533 0.67 0.965238
Target:  5'- -aAGUCGCGuggcggcggcgguGGugGCgGCAGCCUc-- -3'
miRNA:   3'- aaUCAGCGU-------------UCugCGgCGUUGGGaug -5'
1664 5' -54 NC_001347.2 + 101512 0.67 0.962216
Target:  5'- ----aCGCAAGGCGCCGCcguACUUUGu -3'
miRNA:   3'- aaucaGCGUUCUGCGGCGu--UGGGAUg -5'
1664 5' -54 NC_001347.2 + 125259 0.67 0.962216
Target:  5'- ---cUCGC-GGACGCCGCuuuccCCCUGa -3'
miRNA:   3'- aaucAGCGuUCUGCGGCGuu---GGGAUg -5'
1664 5' -54 NC_001347.2 + 1247 0.67 0.962216
Target:  5'- ----gCGCAAGugGUCGCAGCgCgACg -3'
miRNA:   3'- aaucaGCGUUCugCGGCGUUGgGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.