Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16640 | 3' | -48.3 | NC_004156.1 | + | 84909 | 0.66 | 0.99968 |
Target: 5'- cAUGCAaUC-GACaUGGAGGGAGUcGCGu -3' miRNA: 3'- -UACGUgAGuUUGaACCUCUCUUA-CGC- -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 39493 | 0.66 | 0.99968 |
Target: 5'- gGUGUACUCuuAUUUGGAGu---UGCa -3' miRNA: 3'- -UACGUGAGuuUGAACCUCucuuACGc -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 104433 | 0.66 | 0.99968 |
Target: 5'- -gGCAC-CAGugUUGGuGGuGGAUGCa -3' miRNA: 3'- uaCGUGaGUUugAACCuCU-CUUACGc -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 97523 | 0.67 | 0.999597 |
Target: 5'- gGUGCGCUUGuccaucacCUUGGAGccaaaguGAAUGCGu -3' miRNA: 3'- -UACGUGAGUuu------GAACCUCu------CUUACGC- -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 225460 | 0.67 | 0.999597 |
Target: 5'- gGUGUuuagaggaauGCUUAGAgUUGGAG-GAAUGCu -3' miRNA: 3'- -UACG----------UGAGUUUgAACCUCuCUUACGc -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 127809 | 0.68 | 0.998589 |
Target: 5'- -cGUACUCGGugUcGGAGgguAGAGUGUGc -3' miRNA: 3'- uaCGUGAGUUugAaCCUC---UCUUACGC- -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 216945 | 0.68 | 0.997955 |
Target: 5'- -aGCAC-CGAAgagGGuGAGAAUGCGg -3' miRNA: 3'- uaCGUGaGUUUgaaCCuCUCUUACGC- -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 146251 | 0.7 | 0.993596 |
Target: 5'- gAUGCACUCGuccaUUGGAGAu-GUGCu -3' miRNA: 3'- -UACGUGAGUuug-AACCUCUcuUACGc -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 48727 | 0.7 | 0.993596 |
Target: 5'- aAUGUuuaaAGACUUGGAGAGAAccgGCGa -3' miRNA: 3'- -UACGugagUUUGAACCUCUCUUa--CGC- -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 123436 | 0.74 | 0.935491 |
Target: 5'- cUGCGCUCAAACcca-AGAGAGUGCa -3' miRNA: 3'- uACGUGAGUUUGaaccUCUCUUACGc -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 45092 | 0.78 | 0.802729 |
Target: 5'- cAUGCGCUUAAACaUGGAGGGucuGAUGCu -3' miRNA: 3'- -UACGUGAGUUUGaACCUCUC---UUACGc -5' |
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16640 | 3' | -48.3 | NC_004156.1 | + | 81310 | 1.09 | 0.021003 |
Target: 5'- gAUGCACUCAAACUUGGAGAGAAUGCGa -3' miRNA: 3'- -UACGUGAGUUUGAACCUCUCUUACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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