miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16640 5' -50.7 NC_004156.1 + 89067 0.66 0.998126
Target:  5'- --gAGUCUGUUGccaguaggucaccgaGUCCGGUaaaGAGUGCa -3'
miRNA:   3'- acgUCAGACAGC---------------CAGGUCAa--CUUACG- -5'
16640 5' -50.7 NC_004156.1 + 213966 0.67 0.9961
Target:  5'- aUGcCAGUgUacUGGUCCAGUUGGAcGCg -3'
miRNA:   3'- -AC-GUCAgAcaGCCAGGUCAACUUaCG- -5'
16640 5' -50.7 NC_004156.1 + 14511 0.68 0.991912
Target:  5'- --gGGUCcgUGUgcaUGGUCCAGUUGAcuuUGCg -3'
miRNA:   3'- acgUCAG--ACA---GCCAGGUCAACUu--ACG- -5'
16640 5' -50.7 NC_004156.1 + 188429 0.7 0.967747
Target:  5'- cGUAGUCUGaaUCGGUCuCAGUcUGGucaGCa -3'
miRNA:   3'- aCGUCAGAC--AGCCAG-GUCA-ACUua-CG- -5'
16640 5' -50.7 NC_004156.1 + 94109 0.73 0.901118
Target:  5'- cGCAauUCUGUugcUGGUUCAGUUGAAUGUu -3'
miRNA:   3'- aCGUc-AGACA---GCCAGGUCAACUUACG- -5'
16640 5' -50.7 NC_004156.1 + 81272 1.14 0.006719
Target:  5'- aUGCAGUCUGUCGGUCCAGUUGAAUGCa -3'
miRNA:   3'- -ACGUCAGACAGCCAGGUCAACUUACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.