miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16641 3' -51.1 NC_004156.1 + 111154 0.66 0.997006
Target:  5'- gGUGCC-CUUUGACUUGg----AGUGCa -3'
miRNA:   3'- -CACGGcGAAACUGAACguucgUCACG- -5'
16641 3' -51.1 NC_004156.1 + 143856 0.66 0.996474
Target:  5'- aUGCUGCUggugccGGCUUGCAGGU--UGUc -3'
miRNA:   3'- cACGGCGAaa----CUGAACGUUCGucACG- -5'
16641 3' -51.1 NC_004156.1 + 101633 0.66 0.996474
Target:  5'- aGUGuCCGUacaUGugUUGCAucuGGCAaauGUGCg -3'
miRNA:   3'- -CAC-GGCGaa-ACugAACGU---UCGU---CACG- -5'
16641 3' -51.1 NC_004156.1 + 105618 0.67 0.991424
Target:  5'- gGUGCCcCUUUGACUUGguAGUuuuAGUu- -3'
miRNA:   3'- -CACGGcGAAACUGAACguUCG---UCAcg -5'
16641 3' -51.1 NC_004156.1 + 114831 0.67 0.992528
Target:  5'- aGUGCUaGUg--GugUUGgAGGUAGUGCu -3'
miRNA:   3'- -CACGG-CGaaaCugAACgUUCGUCACG- -5'
16641 3' -51.1 NC_004156.1 + 143095 0.69 0.972046
Target:  5'- aGUGCCGCUU---CUUGCAugcGCAGUcCg -3'
miRNA:   3'- -CACGGCGAAacuGAACGUu--CGUCAcG- -5'
16641 3' -51.1 NC_004156.1 + 21112 0.69 0.969086
Target:  5'- aUGCUGgUgggUGcACUUGCAGGCGGUa- -3'
miRNA:   3'- cACGGCgAa--AC-UGAACGUUCGUCAcg -5'
16641 3' -51.1 NC_004156.1 + 102285 0.7 0.962509
Target:  5'- -gGUCGCUgUGGCggUGguGGCGGUGg -3'
miRNA:   3'- caCGGCGAaACUGa-ACguUCGUCACg -5'
16641 3' -51.1 NC_004156.1 + 180539 0.7 0.95888
Target:  5'- uUGCCGUggaUUGGCaUUGCGAuuGCGGUGa -3'
miRNA:   3'- cACGGCGa--AACUG-AACGUU--CGUCACg -5'
16641 3' -51.1 NC_004156.1 + 196580 0.71 0.926162
Target:  5'- -aGCCGUuagacucUUUGACg-GUggGCGGUGCu -3'
miRNA:   3'- caCGGCG-------AAACUGaaCGuuCGUCACG- -5'
16641 3' -51.1 NC_004156.1 + 187715 0.71 0.921118
Target:  5'- -cGCCuGUUUUGAauagagUGCAAGCAucGUGCa -3'
miRNA:   3'- caCGG-CGAAACUga----ACGUUCGU--CACG- -5'
16641 3' -51.1 NC_004156.1 + 90267 0.71 0.932051
Target:  5'- aGUGCCGU--UGACUaGUAA-CAGUGCc -3'
miRNA:   3'- -CACGGCGaaACUGAaCGUUcGUCACG- -5'
16641 3' -51.1 NC_004156.1 + 111573 0.72 0.893548
Target:  5'- uUGCCGCagacaguaccACUUGCAguAGCAGUGUg -3'
miRNA:   3'- cACGGCGaaac------UGAACGU--UCGUCACG- -5'
16641 3' -51.1 NC_004156.1 + 89194 0.79 0.545299
Target:  5'- -gGCCGa--UGACUUGUuuGAGCAGUGCg -3'
miRNA:   3'- caCGGCgaaACUGAACG--UUCGUCACG- -5'
16641 3' -51.1 NC_004156.1 + 90475 1.14 0.005324
Target:  5'- cGUGCCGCUUUGACUUGCAAGCAGUGCa -3'
miRNA:   3'- -CACGGCGAAACUGAACGUUCGUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.