miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16641 5' -47.1 NC_004156.1 + 12307 0.66 0.999989
Target:  5'- aGAuGCUGUugGCAGUUUGagGAuGCg -3'
miRNA:   3'- gUUcUGACGugCGUUAGACagUUuCG- -5'
16641 5' -47.1 NC_004156.1 + 135673 0.67 0.999846
Target:  5'- uCAAGACggGCAUGUAcuAUCUGagaaCAAAGUc -3'
miRNA:   3'- -GUUCUGa-CGUGCGU--UAGACa---GUUUCG- -5'
16641 5' -47.1 NC_004156.1 + 209906 0.67 0.999938
Target:  5'- uCAAGACgcuaaacucgcugagUGUACGCuuuGAUCUGUCGcuGUc -3'
miRNA:   3'- -GUUCUG---------------ACGUGCG---UUAGACAGUuuCG- -5'
16641 5' -47.1 NC_004156.1 + 20703 0.67 0.999881
Target:  5'- aGAGGCUGCcuauCGUAAaCUGUCuaguAGUa -3'
miRNA:   3'- gUUCUGACGu---GCGUUaGACAGuu--UCG- -5'
16641 5' -47.1 NC_004156.1 + 197975 0.68 0.999568
Target:  5'- uCAAGACUGCGgucguucaagacacUGCGgAUC-GUCAGGGUg -3'
miRNA:   3'- -GUUCUGACGU--------------GCGU-UAGaCAGUUUCG- -5'
16641 5' -47.1 NC_004156.1 + 58822 0.68 0.99968
Target:  5'- cCAAGACUGUcgaacaacccaaACGUAAaaaagaGUCAAAGCg -3'
miRNA:   3'- -GUUCUGACG------------UGCGUUaga---CAGUUUCG- -5'
16641 5' -47.1 NC_004156.1 + 89809 0.68 0.999729
Target:  5'- aCAAGAUuaccaaugccgaugUGCAgaaUGCAAUCUcGUCAAuuGGCa -3'
miRNA:   3'- -GUUCUG--------------ACGU---GCGUUAGA-CAGUU--UCG- -5'
16641 5' -47.1 NC_004156.1 + 77880 0.68 0.999748
Target:  5'- aGAGugUGCACGCAAga-GUUuugaAAAGUa -3'
miRNA:   3'- gUUCugACGUGCGUUagaCAG----UUUCG- -5'
16641 5' -47.1 NC_004156.1 + 144264 0.68 0.999748
Target:  5'- aCAGGACaGCACGCAA---GUCaAAAGUc -3'
miRNA:   3'- -GUUCUGaCGUGCGUUagaCAG-UUUCG- -5'
16641 5' -47.1 NC_004156.1 + 197285 0.69 0.999495
Target:  5'- cCAAGAUUGCA---AGUCUGUUuguGAGCa -3'
miRNA:   3'- -GUUCUGACGUgcgUUAGACAGu--UUCG- -5'
16641 5' -47.1 NC_004156.1 + 19245 0.69 0.999372
Target:  5'- --uGACgGUGCGCAGUCUGggcaCGAucGGCg -3'
miRNA:   3'- guuCUGaCGUGCGUUAGACa---GUU--UCG- -5'
16641 5' -47.1 NC_004156.1 + 172699 0.7 0.998589
Target:  5'- uCGGGACUGgACGUGAUCaa-CGAGGCc -3'
miRNA:   3'- -GUUCUGACgUGCGUUAGacaGUUUCG- -5'
16641 5' -47.1 NC_004156.1 + 26305 0.7 0.997097
Target:  5'- gUAGGugUGCACGUuuuUCUGaUAAAGUu -3'
miRNA:   3'- -GUUCugACGUGCGuu-AGACaGUUUCG- -5'
16641 5' -47.1 NC_004156.1 + 4849 0.71 0.994483
Target:  5'- aUAGGGCUGUAUGUAuugaAUCUG-CAuAGCg -3'
miRNA:   3'- -GUUCUGACGUGCGU----UAGACaGUuUCG- -5'
16641 5' -47.1 NC_004156.1 + 68948 0.71 0.995269
Target:  5'- gCAAGAUUGUAC-CGua-UGUCAAGGCu -3'
miRNA:   3'- -GUUCUGACGUGcGUuagACAGUUUCG- -5'
16641 5' -47.1 NC_004156.1 + 207811 0.72 0.991478
Target:  5'- aCAAGugUGCAUGUuugAAUC-GUUggGGCa -3'
miRNA:   3'- -GUUCugACGUGCG---UUAGaCAGuuUCG- -5'
16641 5' -47.1 NC_004156.1 + 208727 0.73 0.981713
Target:  5'- -uGGGCUGUACGCAAUa-GUCGcuGCa -3'
miRNA:   3'- guUCUGACGUGCGUUAgaCAGUuuCG- -5'
16641 5' -47.1 NC_004156.1 + 176864 0.73 0.981713
Target:  5'- uCAGGAUcGCuuGCAAUUUGUCAAauucAGCg -3'
miRNA:   3'- -GUUCUGaCGugCGUUAGACAGUU----UCG- -5'
16641 5' -47.1 NC_004156.1 + 20929 0.75 0.953599
Target:  5'- uCAAGACUGCGucgucgucguuugUGCAGUCgUGUUcGAGCa -3'
miRNA:   3'- -GUUCUGACGU-------------GCGUUAG-ACAGuUUCG- -5'
16641 5' -47.1 NC_004156.1 + 90438 1.15 0.013235
Target:  5'- aCAAGACUGCACGCAAUCUGUCAAAGCa -3'
miRNA:   3'- -GUUCUGACGUGCGUUAGACAGUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.