miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16642 5' -50.2 NC_004156.1 + 84623 0.73 0.925948
Target:  5'- cGCCUUcUUUGAAGAcuAUCCaCCGUACg- -3'
miRNA:   3'- -CGGAGcAAACUUCU--UAGG-GGCAUGga -5'
16642 5' -50.2 NC_004156.1 + 88769 0.68 0.99475
Target:  5'- aGCCUUGUUggccaGAGAA-CUCUGUACCg -3'
miRNA:   3'- -CGGAGCAAac---UUCUUaGGGGCAUGGa -5'
16642 5' -50.2 NC_004156.1 + 114469 0.67 0.997186
Target:  5'- gGUCaUCcUUUGAAGAAUCCCUGcgAUCUg -3'
miRNA:   3'- -CGG-AGcAAACUUCUUAGGGGCa-UGGA- -5'
16642 5' -50.2 NC_004156.1 + 9253 0.66 0.999213
Target:  5'- uCCUCGUUcuGAGAuugaucAUCCUCGUugGCCUc -3'
miRNA:   3'- cGGAGCAAacUUCU------UAGGGGCA--UGGA- -5'
16642 5' -50.2 NC_004156.1 + 92333 1.1 0.014791
Target:  5'- uGCCUCGUUUGAAGAAUCCCCGUACCUc -3'
miRNA:   3'- -CGGAGCAAACUUCUUAGGGGCAUGGA- -5'
16642 5' -50.2 NC_004156.1 + 107047 0.72 0.954053
Target:  5'- aGCCUCGUgaaacGAGUCCCUcUGCCa -3'
miRNA:   3'- -CGGAGCAaacuuCUUAGGGGcAUGGa -5'
16642 5' -50.2 NC_004156.1 + 213472 0.68 0.99475
Target:  5'- aGUgUCGUUUGguGAggCCCUGUACa- -3'
miRNA:   3'- -CGgAGCAAACuuCUuaGGGGCAUGga -5'
16642 5' -50.2 NC_004156.1 + 20477 0.68 0.995479
Target:  5'- gGUCUC--UUGAAGAGUCCCaucaGUGCaCUc -3'
miRNA:   3'- -CGGAGcaAACUUCUUAGGGg---CAUG-GA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.