miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16644 5' -47.7 NC_004156.1 + 175639 0.66 0.999991
Target:  5'- uGCGACugAUGagGCcaacgaggaGGACAC-UGACGa -3'
miRNA:   3'- -CGUUGugUACa-UG---------CCUGUGaACUGCc -5'
16644 5' -47.7 NC_004156.1 + 186294 0.66 0.999991
Target:  5'- cGCuauGCACA---GCGGGCAg-UGAUGGa -3'
miRNA:   3'- -CGu--UGUGUacaUGCCUGUgaACUGCC- -5'
16644 5' -47.7 NC_004156.1 + 99790 0.66 0.999988
Target:  5'- uCGACAC-UGUAUGGAgGCggUGACc- -3'
miRNA:   3'- cGUUGUGuACAUGCCUgUGa-ACUGcc -5'
16644 5' -47.7 NC_004156.1 + 191566 0.66 0.999969
Target:  5'- uCGACACGUGUACcGACAacuCUUGGaacgaGGc -3'
miRNA:   3'- cGUUGUGUACAUGcCUGU---GAACUg----CC- -5'
16644 5' -47.7 NC_004156.1 + 202755 0.67 0.999958
Target:  5'- gGUAGCAC-UGUugAUGGgaGCACUauUGAUGGg -3'
miRNA:   3'- -CGUUGUGuACA--UGCC--UGUGA--ACUGCC- -5'
16644 5' -47.7 NC_004156.1 + 16517 0.67 0.999945
Target:  5'- cCGGuCACGUaauCGGACACUUGaaGCGGu -3'
miRNA:   3'- cGUU-GUGUAcauGCCUGUGAAC--UGCC- -5'
16644 5' -47.7 NC_004156.1 + 212370 0.7 0.998357
Target:  5'- cGCAcACACAUGUAUGuGCACaUGAauCGGu -3'
miRNA:   3'- -CGU-UGUGUACAUGCcUGUGaACU--GCC- -5'
16644 5' -47.7 NC_004156.1 + 83969 0.7 0.998035
Target:  5'- cGCuuCACGUGcgGCGGugGCUcGAUGa -3'
miRNA:   3'- -CGuuGUGUACa-UGCCugUGAaCUGCc -5'
16644 5' -47.7 NC_004156.1 + 131645 0.7 0.998035
Target:  5'- -gGACgACAUGgACGGAgACgggGACGGa -3'
miRNA:   3'- cgUUG-UGUACaUGCCUgUGaa-CUGCC- -5'
16644 5' -47.7 NC_004156.1 + 93234 0.72 0.994312
Target:  5'- uGUAAaagaGCAUGUACGGAaacagguugacguugUACUUGGCGu -3'
miRNA:   3'- -CGUUg---UGUACAUGCCU---------------GUGAACUGCc -5'
16644 5' -47.7 NC_004156.1 + 150460 0.72 0.990856
Target:  5'- gGC-ACGCGUGguggucgGCGGACACUUGugcugcacauCGGu -3'
miRNA:   3'- -CGuUGUGUACa------UGCCUGUGAACu---------GCC- -5'
16644 5' -47.7 NC_004156.1 + 103948 0.74 0.976308
Target:  5'- uGUAAUACAUGUugGGACAaagcacACGGu -3'
miRNA:   3'- -CGUUGUGUACAugCCUGUgaac--UGCC- -5'
16644 5' -47.7 NC_004156.1 + 101880 1.13 0.018037
Target:  5'- uGCAACACAUGUACGGACACUUGACGGc -3'
miRNA:   3'- -CGUUGUGUACAUGCCUGUGAACUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.