Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16645 | 5' | -46.5 | NC_004156.1 | + | 201961 | 0.66 | 0.999996 |
Target: 5'- -cGUGCAAGaccACCGA-CACCGGa- -3' miRNA: 3'- caUACGUUUguaUGGUUaGUGGCCac -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 182020 | 0.66 | 0.999996 |
Target: 5'- -aGUGCAAAaacCGUacugGCCAGUCGgccacauuCCGGUGu -3' miRNA: 3'- caUACGUUU---GUA----UGGUUAGU--------GGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 53109 | 0.66 | 0.999995 |
Target: 5'- -gAUGCAAACGUacaacGCCAAcuaUAgCGGUGa -3' miRNA: 3'- caUACGUUUGUA-----UGGUUa--GUgGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 128875 | 0.66 | 0.999993 |
Target: 5'- aGUGUGCGcauugucaGugAUugCGuUCACCGGg- -3' miRNA: 3'- -CAUACGU--------UugUAugGUuAGUGGCCac -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 19439 | 0.66 | 0.99999 |
Target: 5'- --uUGCGcucucAGCucaagACCAAUCgACCGGUGc -3' miRNA: 3'- cauACGU-----UUGua---UGGUUAG-UGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 62814 | 0.66 | 0.999986 |
Target: 5'- aGUGUGCcagGGACccACCAcggaACCGGUGg -3' miRNA: 3'- -CAUACG---UUUGuaUGGUuag-UGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 129687 | 0.67 | 0.99998 |
Target: 5'- -gAUGgAGACGgugGCCu-UUGCCGGUGg -3' miRNA: 3'- caUACgUUUGUa--UGGuuAGUGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 114516 | 0.67 | 0.99998 |
Target: 5'- ---gGCAAAgGUGCCGugCACCGGc- -3' miRNA: 3'- cauaCGUUUgUAUGGUuaGUGGCCac -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 109519 | 0.67 | 0.999973 |
Target: 5'- aGUGUGUAuaAAUugGCCAacaccauuuGUCACCGGUa -3' miRNA: 3'- -CAUACGU--UUGuaUGGU---------UAGUGGCCAc -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 61947 | 0.67 | 0.999951 |
Target: 5'- cGUA-GguGACugAUCGAUUACCGGUGg -3' miRNA: 3'- -CAUaCguUUGuaUGGUUAGUGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 183994 | 0.67 | 0.999935 |
Target: 5'- --cUGCGAAUAUgGCCaAAUCGgcuCCGGUGa -3' miRNA: 3'- cauACGUUUGUA-UGG-UUAGU---GGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 145904 | 0.68 | 0.999887 |
Target: 5'- --uUGUAGACGUcgcacaACCGugCACCGGUGc -3' miRNA: 3'- cauACGUUUGUA------UGGUuaGUGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 40280 | 0.68 | 0.999853 |
Target: 5'- ---aGCAAuCAUGCagagCAGUaCACCGGUGg -3' miRNA: 3'- cauaCGUUuGUAUG----GUUA-GUGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 39277 | 0.69 | 0.999758 |
Target: 5'- -gGUGgAGACAUGCUAguGUCGCUGGc- -3' miRNA: 3'- caUACgUUUGUAUGGU--UAGUGGCCac -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 15929 | 0.69 | 0.999513 |
Target: 5'- uUGUGCccauGCGUACCGAggcgccCACCGGa- -3' miRNA: 3'- cAUACGuu--UGUAUGGUUa-----GUGGCCac -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 191049 | 0.69 | 0.999393 |
Target: 5'- --uUGUcAAUAUACCGGU-GCCGGUGg -3' miRNA: 3'- cauACGuUUGUAUGGUUAgUGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 95487 | 0.7 | 0.999249 |
Target: 5'- uGUGUGUAAAUuggacaAUGCCAG-CACUGGUa -3' miRNA: 3'- -CAUACGUUUG------UAUGGUUaGUGGCCAc -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 83505 | 0.72 | 0.996032 |
Target: 5'- -aGUGUAAACA-ACCaAGUgACCGGUGu -3' miRNA: 3'- caUACGUUUGUaUGG-UUAgUGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 37385 | 0.72 | 0.994052 |
Target: 5'- ----aCAAACAUGCCAccguucagauagaugAUUACCGGUGa -3' miRNA: 3'- cauacGUUUGUAUGGU---------------UAGUGGCCAC- -5' |
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16645 | 5' | -46.5 | NC_004156.1 | + | 52938 | 0.74 | 0.979618 |
Target: 5'- ---aGCAAACAUgACCAcgC-CCGGUGg -3' miRNA: 3'- cauaCGUUUGUA-UGGUuaGuGGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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