miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16645 5' -46.5 NC_004156.1 + 182020 0.66 0.999996
Target:  5'- -aGUGCAAAaacCGUacugGCCAGUCGgccacauuCCGGUGu -3'
miRNA:   3'- caUACGUUU---GUA----UGGUUAGU--------GGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 201961 0.66 0.999996
Target:  5'- -cGUGCAAGaccACCGA-CACCGGa- -3'
miRNA:   3'- caUACGUUUguaUGGUUaGUGGCCac -5'
16645 5' -46.5 NC_004156.1 + 53109 0.66 0.999995
Target:  5'- -gAUGCAAACGUacaacGCCAAcuaUAgCGGUGa -3'
miRNA:   3'- caUACGUUUGUA-----UGGUUa--GUgGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 128875 0.66 0.999993
Target:  5'- aGUGUGCGcauugucaGugAUugCGuUCACCGGg- -3'
miRNA:   3'- -CAUACGU--------UugUAugGUuAGUGGCCac -5'
16645 5' -46.5 NC_004156.1 + 19439 0.66 0.99999
Target:  5'- --uUGCGcucucAGCucaagACCAAUCgACCGGUGc -3'
miRNA:   3'- cauACGU-----UUGua---UGGUUAG-UGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 62814 0.66 0.999986
Target:  5'- aGUGUGCcagGGACccACCAcggaACCGGUGg -3'
miRNA:   3'- -CAUACG---UUUGuaUGGUuag-UGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 114516 0.67 0.99998
Target:  5'- ---gGCAAAgGUGCCGugCACCGGc- -3'
miRNA:   3'- cauaCGUUUgUAUGGUuaGUGGCCac -5'
16645 5' -46.5 NC_004156.1 + 129687 0.67 0.99998
Target:  5'- -gAUGgAGACGgugGCCu-UUGCCGGUGg -3'
miRNA:   3'- caUACgUUUGUa--UGGuuAGUGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 109519 0.67 0.999973
Target:  5'- aGUGUGUAuaAAUugGCCAacaccauuuGUCACCGGUa -3'
miRNA:   3'- -CAUACGU--UUGuaUGGU---------UAGUGGCCAc -5'
16645 5' -46.5 NC_004156.1 + 61947 0.67 0.999951
Target:  5'- cGUA-GguGACugAUCGAUUACCGGUGg -3'
miRNA:   3'- -CAUaCguUUGuaUGGUUAGUGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 183994 0.67 0.999935
Target:  5'- --cUGCGAAUAUgGCCaAAUCGgcuCCGGUGa -3'
miRNA:   3'- cauACGUUUGUA-UGG-UUAGU---GGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 145904 0.68 0.999887
Target:  5'- --uUGUAGACGUcgcacaACCGugCACCGGUGc -3'
miRNA:   3'- cauACGUUUGUA------UGGUuaGUGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 40280 0.68 0.999853
Target:  5'- ---aGCAAuCAUGCagagCAGUaCACCGGUGg -3'
miRNA:   3'- cauaCGUUuGUAUG----GUUA-GUGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 39277 0.69 0.999758
Target:  5'- -gGUGgAGACAUGCUAguGUCGCUGGc- -3'
miRNA:   3'- caUACgUUUGUAUGGU--UAGUGGCCac -5'
16645 5' -46.5 NC_004156.1 + 15929 0.69 0.999513
Target:  5'- uUGUGCccauGCGUACCGAggcgccCACCGGa- -3'
miRNA:   3'- cAUACGuu--UGUAUGGUUa-----GUGGCCac -5'
16645 5' -46.5 NC_004156.1 + 191049 0.69 0.999393
Target:  5'- --uUGUcAAUAUACCGGU-GCCGGUGg -3'
miRNA:   3'- cauACGuUUGUAUGGUUAgUGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 95487 0.7 0.999249
Target:  5'- uGUGUGUAAAUuggacaAUGCCAG-CACUGGUa -3'
miRNA:   3'- -CAUACGUUUG------UAUGGUUaGUGGCCAc -5'
16645 5' -46.5 NC_004156.1 + 83505 0.72 0.996032
Target:  5'- -aGUGUAAACA-ACCaAGUgACCGGUGu -3'
miRNA:   3'- caUACGUUUGUaUGG-UUAgUGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 37385 0.72 0.994052
Target:  5'- ----aCAAACAUGCCAccguucagauagaugAUUACCGGUGa -3'
miRNA:   3'- cauacGUUUGUAUGGU---------------UAGUGGCCAC- -5'
16645 5' -46.5 NC_004156.1 + 52938 0.74 0.979618
Target:  5'- ---aGCAAACAUgACCAcgC-CCGGUGg -3'
miRNA:   3'- cauaCGUUUGUA-UGGUuaGuGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.