miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16646 3' -50.5 NC_004156.1 + 135603 0.66 0.999213
Target:  5'- aGAUUCUGCGCAacucUUCcGGGAUGaugGUa -3'
miRNA:   3'- gCUAAGACGUGUc---AAGcUCCUACg--CG- -5'
16646 3' -50.5 NC_004156.1 + 11302 0.66 0.99832
Target:  5'- --uUUCUGCACcGga-GAGGGUGCa- -3'
miRNA:   3'- gcuAAGACGUGuCaagCUCCUACGcg -5'
16646 3' -50.5 NC_004156.1 + 144847 0.67 0.99796
Target:  5'- -cAUUUUGCACGGUacggUGAGGuguagugGUGUGCa -3'
miRNA:   3'- gcUAAGACGUGUCAa---GCUCC-------UACGCG- -5'
16646 3' -50.5 NC_004156.1 + 16584 0.67 0.997619
Target:  5'- aGGUUCUGUACAGcuugauaaugUGAGaGAUgaGCGCu -3'
miRNA:   3'- gCUAAGACGUGUCaa--------GCUC-CUA--CGCG- -5'
16646 3' -50.5 NC_004156.1 + 218191 0.67 0.997186
Target:  5'- uCGGUgUCUGUACAcGUUCGAcGA-GUGCa -3'
miRNA:   3'- -GCUA-AGACGUGU-CAAGCUcCUaCGCG- -5'
16646 3' -50.5 NC_004156.1 + 225485 0.67 0.996689
Target:  5'- gGAggaaUGCuuACAGUUgGAGGAcUGCGUa -3'
miRNA:   3'- gCUaag-ACG--UGUCAAgCUCCU-ACGCG- -5'
16646 3' -50.5 NC_004156.1 + 96808 0.68 0.99198
Target:  5'- uGGUUCcgagugGUACAGUUgGAGG-UGgGCg -3'
miRNA:   3'- gCUAAGa-----CGUGUCAAgCUCCuACgCG- -5'
16646 3' -50.5 NC_004156.1 + 141096 0.69 0.988737
Target:  5'- aGAggUCUGCcaACuuuucaaugucaucgAGUUCgGAGGAUGCGUa -3'
miRNA:   3'- gCUa-AGACG--UG---------------UCAAG-CUCCUACGCG- -5'
16646 3' -50.5 NC_004156.1 + 196641 0.69 0.988159
Target:  5'- ---aUCUGC-CGG-UC-AGGAUGCGCa -3'
miRNA:   3'- gcuaAGACGuGUCaAGcUCCUACGCG- -5'
16646 3' -50.5 NC_004156.1 + 12307 0.88 0.271914
Target:  5'- aGAUgCUGUugGCAGUUUGAGGAUGCGCu -3'
miRNA:   3'- gCUAaGACG--UGUCAAGCUCCUACGCG- -5'
16646 3' -50.5 NC_004156.1 + 107156 1.13 0.008952
Target:  5'- gCGAUUCUGCACAGUUCGAGGAUGCGCu -3'
miRNA:   3'- -GCUAAGACGUGUCAAGCUCCUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.