miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16646 5' -53.1 NC_004156.1 + 97543 0.66 0.992016
Target:  5'- uUGgGAuuGUCCUuguugGCGgUGCGCuuGUCCa -3'
miRNA:   3'- gACgCU--CAGGG-----UGUgACGCGuuUAGG- -5'
16646 5' -53.1 NC_004156.1 + 186250 0.66 0.992016
Target:  5'- --aCGAGUCCCACcgguGCUGUauacacuuucaGCAucUCCa -3'
miRNA:   3'- gacGCUCAGGGUG----UGACG-----------CGUuuAGG- -5'
16646 5' -53.1 NC_004156.1 + 108418 0.66 0.990892
Target:  5'- uCUGCG--UCCCGa---GUGCAGAUCCa -3'
miRNA:   3'- -GACGCucAGGGUgugaCGCGUUUAGG- -5'
16646 5' -53.1 NC_004156.1 + 146402 0.66 0.990892
Target:  5'- aCUGuCGAGUCCaccacuaGCACgGU-CAGAUCCc -3'
miRNA:   3'- -GAC-GCUCAGGg------UGUGaCGcGUUUAGG- -5'
16646 5' -53.1 NC_004156.1 + 178345 0.66 0.989647
Target:  5'- aCUGCGAGUCggcauCCAUgAUUGCGguGG-CCu -3'
miRNA:   3'- -GACGCUCAG-----GGUG-UGACGCguUUaGG- -5'
16646 5' -53.1 NC_004156.1 + 146146 0.66 0.987382
Target:  5'- gUGCGAcGUCUacaaaaaggcggugGCugUGCGCAAAcccUCCa -3'
miRNA:   3'- gACGCU-CAGGg-------------UGugACGCGUUU---AGG- -5'
16646 5' -53.1 NC_004156.1 + 152601 0.67 0.983292
Target:  5'- uCUGCauuGGGaUCaUCACACUGCGCAAAg-- -3'
miRNA:   3'- -GACG---CUC-AG-GGUGUGACGCGUUUagg -5'
16646 5' -53.1 NC_004156.1 + 109578 0.67 0.981319
Target:  5'- -aGCGucccuGUUUCGUACUGCGCA-AUCCa -3'
miRNA:   3'- gaCGCu----CAGGGUGUGACGCGUuUAGG- -5'
16646 5' -53.1 NC_004156.1 + 104606 0.67 0.976858
Target:  5'- aCUGgauCGAGUCCCAUGCcGUGCAAc--- -3'
miRNA:   3'- -GAC---GCUCAGGGUGUGaCGCGUUuagg -5'
16646 5' -53.1 NC_004156.1 + 138858 0.67 0.976858
Target:  5'- --aCGAGU-CCAgAgUGCGUAAAUCCu -3'
miRNA:   3'- gacGCUCAgGGUgUgACGCGUUUAGG- -5'
16646 5' -53.1 NC_004156.1 + 153093 0.68 0.971659
Target:  5'- -aGCGcuucuGUgCCCACACUcugaGCGGAUCCa -3'
miRNA:   3'- gaCGCu----CA-GGGUGUGAcg--CGUUUAGG- -5'
16646 5' -53.1 NC_004156.1 + 138933 0.68 0.968767
Target:  5'- -cGgGGGUCaucuugCACugUGCGCAAAcgCCa -3'
miRNA:   3'- gaCgCUCAGg-----GUGugACGCGUUUa-GG- -5'
16646 5' -53.1 NC_004156.1 + 190724 0.68 0.962363
Target:  5'- uUGcCGAGUCCCcggacucgucuACACcgaacGCGUAAAUCUg -3'
miRNA:   3'- gAC-GCUCAGGG-----------UGUGa----CGCGUUUAGG- -5'
16646 5' -53.1 NC_004156.1 + 188221 0.69 0.942515
Target:  5'- aCUGCGAGUgCUGCACgcuuugagaGUGCA--UCCa -3'
miRNA:   3'- -GACGCUCAgGGUGUGa--------CGCGUuuAGG- -5'
16646 5' -53.1 NC_004156.1 + 86131 0.7 0.932966
Target:  5'- cCUGCGAcGUUagCCACACU-CGUAAAUCa -3'
miRNA:   3'- -GACGCU-CAG--GGUGUGAcGCGUUUAGg -5'
16646 5' -53.1 NC_004156.1 + 62569 0.7 0.916874
Target:  5'- -gGUGGGUCCCuggcACACUGCGUAc---- -3'
miRNA:   3'- gaCGCUCAGGG----UGUGACGCGUuuagg -5'
16646 5' -53.1 NC_004156.1 + 130402 0.7 0.90497
Target:  5'- --aUGAGUgaUC-CACUGCGCAAAUCCa -3'
miRNA:   3'- gacGCUCAg-GGuGUGACGCGUUUAGG- -5'
16646 5' -53.1 NC_004156.1 + 130826 0.7 0.90497
Target:  5'- -cGCG-GUCCaaaacugAUACUGCGaCAGAUCCu -3'
miRNA:   3'- gaCGCuCAGGg------UGUGACGC-GUUUAGG- -5'
16646 5' -53.1 NC_004156.1 + 130176 0.74 0.779547
Target:  5'- aCUGCuGAGgguguacgCUCACACUGaCGaCAAGUCCa -3'
miRNA:   3'- -GACG-CUCa-------GGGUGUGAC-GC-GUUUAGG- -5'
16646 5' -53.1 NC_004156.1 + 147651 0.75 0.702392
Target:  5'- gUGUGAGUCCUAaaguagacuCGCUGCGU--GUCCg -3'
miRNA:   3'- gACGCUCAGGGU---------GUGACGCGuuUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.