miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16647 3' -52 NC_004156.1 + 11305 0.66 0.993297
Target:  5'- cUGCaCCGGagaggGUGCAUCAAACGCAu -3'
miRNA:   3'- -ACG-GGUCaugagCAUGUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 16035 0.7 0.937902
Target:  5'- aUGCUCGuuGUACgcguuaaaaCGUAUACCAGAUGCAg -3'
miRNA:   3'- -ACGGGU--CAUGa--------GCAUGUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 18874 0.67 0.988605
Target:  5'- aGCCUAGUACUaGUACuACCAAAaauCAa -3'
miRNA:   3'- aCGGGUCAUGAgCAUG-UGGUUUgc-GU- -5'
16647 3' -52 NC_004156.1 + 21420 0.67 0.991195
Target:  5'- gGCgCuGUACaaggagCGUACACCaAAGCGCu -3'
miRNA:   3'- aCGgGuCAUGa-----GCAUGUGG-UUUGCGu -5'
16647 3' -52 NC_004156.1 + 22601 0.67 0.991195
Target:  5'- gUGCUCGGUGCUUGUAguuuguagcUugUAGAUGUAg -3'
miRNA:   3'- -ACGGGUCAUGAGCAU---------GugGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 40614 0.66 0.993297
Target:  5'- cGUCCgAGUAgaUCGUcuACACCAAACGa- -3'
miRNA:   3'- aCGGG-UCAUg-AGCA--UGUGGUUUGCgu -5'
16647 3' -52 NC_004156.1 + 42978 0.68 0.981688
Target:  5'- cGCCUGGUACUaucCGUugAUCAAuUGCGa -3'
miRNA:   3'- aCGGGUCAUGA---GCAugUGGUUuGCGU- -5'
16647 3' -52 NC_004156.1 + 44957 0.66 0.994186
Target:  5'- cGCCUGGUACg---GCACCGGuCGCc -3'
miRNA:   3'- aCGGGUCAUGagcaUGUGGUUuGCGu -5'
16647 3' -52 NC_004156.1 + 76409 0.67 0.988605
Target:  5'- cGUCCAaguGUACUCGUACAguuUCAGAUuggGCAc -3'
miRNA:   3'- aCGGGU---CAUGAGCAUGU---GGUUUG---CGU- -5'
16647 3' -52 NC_004156.1 + 81203 0.75 0.728618
Target:  5'- cUGCCCAGaggGCaUCGU--ACCGAGCGCAa -3'
miRNA:   3'- -ACGGGUCa--UG-AGCAugUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 82429 0.67 0.988605
Target:  5'- uUGCCCAGagGCgaugUGUGCACCGAG-GUc -3'
miRNA:   3'- -ACGGGUCa-UGa---GCAUGUGGUUUgCGu -5'
16647 3' -52 NC_004156.1 + 89631 0.68 0.974719
Target:  5'- aGCuUCGGUGCUCGcACugCAGuAUGCAa -3'
miRNA:   3'- aCG-GGUCAUGAGCaUGugGUU-UGCGU- -5'
16647 3' -52 NC_004156.1 + 95069 0.66 0.993297
Target:  5'- aGCCCAGUAC-CGUugcagaggcCAUCAAACuGUAc -3'
miRNA:   3'- aCGGGUCAUGaGCAu--------GUGGUUUG-CGU- -5'
16647 3' -52 NC_004156.1 + 109078 0.66 0.992198
Target:  5'- aGUgUAGUGCUCacaccggucaagaGUACAUUGGACGCAu -3'
miRNA:   3'- aCGgGUCAUGAG-------------CAUGUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 109843 0.67 0.985458
Target:  5'- aUGCaCUAG-ACUCGUugACCGAACc-- -3'
miRNA:   3'- -ACG-GGUCaUGAGCAugUGGUUUGcgu -5'
16647 3' -52 NC_004156.1 + 110188 1.09 0.009634
Target:  5'- uUGCCCAGUACUCGUACACCAAACGCAu -3'
miRNA:   3'- -ACGGGUCAUGAGCAUGUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 140417 0.67 0.988605
Target:  5'- aGCCCA-----UGUGCACgGGACGCAa -3'
miRNA:   3'- aCGGGUcaugaGCAUGUGgUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 151757 0.69 0.959113
Target:  5'- gGCCaAGUGCUCGUugucGCugCAAcccggugguauGCGCAu -3'
miRNA:   3'- aCGGgUCAUGAGCA----UGugGUU-----------UGCGU- -5'
16647 3' -52 NC_004156.1 + 158390 0.66 0.993297
Target:  5'- aGUCCAGUguauagACguugUGUGUACCGAAUGCAa -3'
miRNA:   3'- aCGGGUCA------UGa---GCAUGUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 163593 0.66 0.993297
Target:  5'- gGCUCAGUuuuACUCGUACG---AugGCAa -3'
miRNA:   3'- aCGGGUCA---UGAGCAUGUgguUugCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.