Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16647 | 3' | -52 | NC_004156.1 | + | 42978 | 0.68 | 0.981688 |
Target: 5'- cGCCUGGUACUaucCGUugAUCAAuUGCGa -3' miRNA: 3'- aCGGGUCAUGA---GCAugUGGUUuGCGU- -5' |
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16647 | 3' | -52 | NC_004156.1 | + | 214139 | 0.68 | 0.977227 |
Target: 5'- cGCaCCAGUACUCugGCGUCGAACGUu -3' miRNA: 3'- aCG-GGUCAUGAGcaUGUGGUUUGCGu -5' |
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16647 | 3' | -52 | NC_004156.1 | + | 89631 | 0.68 | 0.974719 |
Target: 5'- aGCuUCGGUGCUCGcACugCAGuAUGCAa -3' miRNA: 3'- aCG-GGUCAUGAGCaUGugGUU-UGCGU- -5' |
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16647 | 3' | -52 | NC_004156.1 | + | 151757 | 0.69 | 0.959113 |
Target: 5'- gGCCaAGUGCUCGUugucGCugCAAcccggugguauGCGCAu -3' miRNA: 3'- aCGGgUCAUGAGCA----UGugGUU-----------UGCGU- -5' |
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16647 | 3' | -52 | NC_004156.1 | + | 16035 | 0.7 | 0.937902 |
Target: 5'- aUGCUCGuuGUACgcguuaaaaCGUAUACCAGAUGCAg -3' miRNA: 3'- -ACGGGU--CAUGa--------GCAUGUGGUUUGCGU- -5' |
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16647 | 3' | -52 | NC_004156.1 | + | 81203 | 0.75 | 0.728618 |
Target: 5'- cUGCCCAGaggGCaUCGU--ACCGAGCGCAa -3' miRNA: 3'- -ACGGGUCa--UG-AGCAugUGGUUUGCGU- -5' |
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16647 | 3' | -52 | NC_004156.1 | + | 190724 | 0.8 | 0.495747 |
Target: 5'- uUGCCgAGUccccggACUCGUcuACACCGAACGCGu -3' miRNA: 3'- -ACGGgUCA------UGAGCA--UGUGGUUUGCGU- -5' |
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16647 | 3' | -52 | NC_004156.1 | + | 110188 | 1.09 | 0.009634 |
Target: 5'- uUGCCCAGUACUCGUACACCAAACGCAu -3' miRNA: 3'- -ACGGGUCAUGAGCAUGUGGUUUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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