miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16647 5' -57.1 NC_004156.1 + 67705 0.66 0.940063
Target:  5'- ---cUGAUGCCAC-CGGCcaagaccaACUCGGUGa -3'
miRNA:   3'- gcacGCUACGGUGuGUCG--------UGAGCCGC- -5'
16647 5' -57.1 NC_004156.1 + 169490 0.66 0.930545
Target:  5'- gCGUGCaGA-GCCACAUAuGCAaaguauugaaUCGGCa -3'
miRNA:   3'- -GCACG-CUaCGGUGUGU-CGUg---------AGCCGc -5'
16647 5' -57.1 NC_004156.1 + 157278 0.66 0.914594
Target:  5'- gCGUGCGAgGaacgCAUACAGCGCcuguUUGGUGg -3'
miRNA:   3'- -GCACGCUaCg---GUGUGUCGUG----AGCCGC- -5'
16647 5' -57.1 NC_004156.1 + 4038 0.67 0.908832
Target:  5'- ---cCGA-GCCAgAUAGCACUCGGUc -3'
miRNA:   3'- gcacGCUaCGGUgUGUCGUGAGCCGc -5'
16647 5' -57.1 NC_004156.1 + 23438 0.67 0.90285
Target:  5'- -aUGCGAucgauUGCCuCGCAGUAaUCGGCu -3'
miRNA:   3'- gcACGCU-----ACGGuGUGUCGUgAGCCGc -5'
16647 5' -57.1 NC_004156.1 + 180609 0.67 0.90285
Target:  5'- cCGUGCacucgagaGGUGCCcaaugcGCACAGCgauGCUCGGg- -3'
miRNA:   3'- -GCACG--------CUACGG------UGUGUCG---UGAGCCgc -5'
16647 5' -57.1 NC_004156.1 + 42298 0.67 0.899156
Target:  5'- cCGUGCccagauucgaggaugGAUcGCgACACAGCAcCUUGGUGu -3'
miRNA:   3'- -GCACG---------------CUA-CGgUGUGUCGU-GAGCCGC- -5'
16647 5' -57.1 NC_004156.1 + 16056 0.67 0.87677
Target:  5'- uGUGCGGUaGCaucuGCACcgaGGCACuccUCGGCGu -3'
miRNA:   3'- gCACGCUA-CGg---UGUG---UCGUG---AGCCGC- -5'
16647 5' -57.1 NC_004156.1 + 157046 0.68 0.86973
Target:  5'- gGUGCGAaGCUuuauCAC-GCACUCGGg- -3'
miRNA:   3'- gCACGCUaCGGu---GUGuCGUGAGCCgc -5'
16647 5' -57.1 NC_004156.1 + 95915 0.7 0.772347
Target:  5'- --cGaCGAUGCCAaucuggcaguguuuCAGCACUCGGCc -3'
miRNA:   3'- gcaC-GCUACGGUgu------------GUCGUGAGCCGc -5'
16647 5' -57.1 NC_004156.1 + 15810 0.73 0.597301
Target:  5'- gGUGCaGAUGCUaccGCACAGCACUcugaaCGGUa -3'
miRNA:   3'- gCACG-CUACGG---UGUGUCGUGA-----GCCGc -5'
16647 5' -57.1 NC_004156.1 + 108339 0.74 0.519769
Target:  5'- aCGgcgGCGaAUGCCAC-CAGuCugUCGGCGu -3'
miRNA:   3'- -GCa--CGC-UACGGUGuGUC-GugAGCCGC- -5'
16647 5' -57.1 NC_004156.1 + 89174 0.76 0.446502
Target:  5'- aGUGCGAUGUaaaGCGCAGCACUagcagugcCGGUa -3'
miRNA:   3'- gCACGCUACGg--UGUGUCGUGA--------GCCGc -5'
16647 5' -57.1 NC_004156.1 + 110152 1.08 0.004076
Target:  5'- uCGUGCGAUGCCACACAGCACUCGGCGu -3'
miRNA:   3'- -GCACGCUACGGUGUGUCGUGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.