miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16648 3' -53 NC_004156.1 + 220230 0.66 0.98636
Target:  5'- --gGGCUACAC--UCUGAUGACGCUa -3'
miRNA:   3'- uaaCCGGUGUGacAGGUUGCUGUGAg -5'
16648 3' -53 NC_004156.1 + 68901 0.66 0.98636
Target:  5'- -cUGGCCACGCUGUgUGACuGGC-Ca- -3'
miRNA:   3'- uaACCGGUGUGACAgGUUG-CUGuGag -5'
16648 3' -53 NC_004156.1 + 152439 0.66 0.980702
Target:  5'- -gUGGCCAUcauguACUGUUgCAACGACAg-- -3'
miRNA:   3'- uaACCGGUG-----UGACAG-GUUGCUGUgag -5'
16648 3' -53 NC_004156.1 + 73936 0.67 0.976059
Target:  5'- --aGGCCACACUGcCUGAaucucUGGCAgUCu -3'
miRNA:   3'- uaaCCGGUGUGACaGGUU-----GCUGUgAG- -5'
16648 3' -53 NC_004156.1 + 224607 0.67 0.973452
Target:  5'- --aGGCCACuCgggcaauuUCCAACGAgGCUCc -3'
miRNA:   3'- uaaCCGGUGuGac------AGGUUGCUgUGAG- -5'
16648 3' -53 NC_004156.1 + 111075 0.67 0.970646
Target:  5'- --cGGCCACACUGaUgAugGGCGauCUCu -3'
miRNA:   3'- uaaCCGGUGUGACaGgUugCUGU--GAG- -5'
16648 3' -53 NC_004156.1 + 43179 0.68 0.964409
Target:  5'- uUUGGCUAUGCUGUaaacUCGAUGGUACUCu -3'
miRNA:   3'- uAACCGGUGUGACA----GGUUGCUGUGAG- -5'
16648 3' -53 NC_004156.1 + 90002 0.68 0.949271
Target:  5'- --aGGCCugcuugucgGCACUGUuacuagUCAACGGCACUg -3'
miRNA:   3'- uaaCCGG---------UGUGACA------GGUUGCUGUGAg -5'
16648 3' -53 NC_004156.1 + 14833 0.68 0.949271
Target:  5'- --cGGCCACAUUGagCAGCGcC-CUCa -3'
miRNA:   3'- uaaCCGGUGUGACagGUUGCuGuGAG- -5'
16648 3' -53 NC_004156.1 + 157862 0.7 0.913643
Target:  5'- --cGGUCGCAUUGUCUAgaaaacgaaaGCGACAC-Ca -3'
miRNA:   3'- uaaCCGGUGUGACAGGU----------UGCUGUGaG- -5'
16648 3' -53 NC_004156.1 + 132787 0.71 0.873751
Target:  5'- --aGGUuuugcaucagCAUACUGUCCAGCaGCACUCc -3'
miRNA:   3'- uaaCCG----------GUGUGACAGGUUGcUGUGAG- -5'
16648 3' -53 NC_004156.1 + 183580 0.71 0.850776
Target:  5'- -cUGGCCGCACUGggaCCuugUGugGCUCc -3'
miRNA:   3'- uaACCGGUGUGACa--GGuu-GCugUGAG- -5'
16648 3' -53 NC_004156.1 + 127644 0.72 0.845957
Target:  5'- cUUGGCCACAUUGUUgaUGACGACccgauucuugaccagACUCa -3'
miRNA:   3'- uAACCGGUGUGACAG--GUUGCUG---------------UGAG- -5'
16648 3' -53 NC_004156.1 + 191742 0.85 0.211916
Target:  5'- uUUGGCCAUAgUGUCCAGCGACAgCUUa -3'
miRNA:   3'- uAACCGGUGUgACAGGUUGCUGU-GAG- -5'
16648 3' -53 NC_004156.1 + 112219 1.09 0.007503
Target:  5'- cAUUGGCCACACUGUCCAACGACACUCg -3'
miRNA:   3'- -UAACCGGUGUGACAGGUUGCUGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.