Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16649 | 3' | -55.8 | NC_004156.1 | + | 123056 | 1.09 | 0.004028 |
Target: 5'- cCGGUGCAAGCACCAGUGCCAGUACCAg -3' miRNA: 3'- -GCCACGUUCGUGGUCACGGUCAUGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 185930 | 0.88 | 0.099222 |
Target: 5'- uGGUGCuagugcuaguaccAGUACCAGUGCCAGUGCCAg -3' miRNA: 3'- gCCACGu------------UCGUGGUCACGGUCAUGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 68513 | 0.77 | 0.439473 |
Target: 5'- aCGGUGCAucaaagAGCACUcagacuAGUGCCAgcaGUACCAg -3' miRNA: 3'- -GCCACGU------UCGUGG------UCACGGU---CAUGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 206314 | 0.76 | 0.485207 |
Target: 5'- ---aGCAccGGUACCAGUGCCGGUACUc -3' miRNA: 3'- gccaCGU--UCGUGGUCACGGUCAUGGu -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 49817 | 0.73 | 0.622778 |
Target: 5'- ---aGC-AGUAUCAGUGCUAGUACCAg -3' miRNA: 3'- gccaCGuUCGUGGUCACGGUCAUGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 68228 | 0.7 | 0.806391 |
Target: 5'- --cUGCGAGuCugCAGUGCUGGUACUg -3' miRNA: 3'- gccACGUUC-GugGUCACGGUCAUGGu -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 22584 | 0.7 | 0.806391 |
Target: 5'- uCGGUGCucgGAGC-UCGGUGCuCGGUGCUu -3' miRNA: 3'- -GCCACG---UUCGuGGUCACG-GUCAUGGu -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 60341 | 0.69 | 0.831829 |
Target: 5'- gGGUGCcuguaguuGUACCAguGUGCCAGUAUUg -3' miRNA: 3'- gCCACGuu------CGUGGU--CACGGUCAUGGu -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 103752 | 0.68 | 0.870606 |
Target: 5'- --aUGCAcccGCACCauaccaaaagAGUGCCAGUGCUAa -3' miRNA: 3'- gccACGUu--CGUGG----------UCACGGUCAUGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 213659 | 0.68 | 0.870606 |
Target: 5'- -aGUGCGAGUACCGGUGUCGuucagaguGUGCa- -3' miRNA: 3'- gcCACGUUCGUGGUCACGGU--------CAUGgu -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 70047 | 0.68 | 0.87776 |
Target: 5'- aCGGUGCAcgaccacuaucAGUACCAGUGgUguGGUGCa- -3' miRNA: 3'- -GCCACGU-----------UCGUGGUCACgG--UCAUGgu -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 114763 | 0.68 | 0.891425 |
Target: 5'- cCGGUGCAcGGCACCuuUGCCuuGU-CCGc -3' miRNA: 3'- -GCCACGU-UCGUGGucACGGu-CAuGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 164398 | 0.68 | 0.891425 |
Target: 5'- -aGUGCcAGCACUGGUacccucuCCAGUACCAg -3' miRNA: 3'- gcCACGuUCGUGGUCAc------GGUCAUGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 20603 | 0.68 | 0.897928 |
Target: 5'- gCGGUGCuguuGUGCCAGcucgugcaucgGCCuAGUGCCGc -3' miRNA: 3'- -GCCACGuu--CGUGGUCa----------CGG-UCAUGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 89174 | 0.67 | 0.904205 |
Target: 5'- -aGUGCGauguaaagcgcAGCACuagCAGUGCCGGUACgAa -3' miRNA: 3'- gcCACGU-----------UCGUG---GUCACGGUCAUGgU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 141714 | 0.67 | 0.910255 |
Target: 5'- aGaUGUAGGCGCCGGUagcGCUAGU-CCAa -3' miRNA: 3'- gCcACGUUCGUGGUCA---CGGUCAuGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 53349 | 0.67 | 0.916076 |
Target: 5'- ---aGCAccacCACCAGUGCCAGUaaaaGCCGa -3' miRNA: 3'- gccaCGUuc--GUGGUCACGGUCA----UGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 44705 | 0.67 | 0.916076 |
Target: 5'- ----cCAGGCgACCGGUGCC-GUACCAg -3' miRNA: 3'- gccacGUUCG-UGGUCACGGuCAUGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 77175 | 0.67 | 0.916076 |
Target: 5'- -uGUaCAAG-ACCAGUGCCAGUuuGCCGu -3' miRNA: 3'- gcCAcGUUCgUGGUCACGGUCA--UGGU- -5' |
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16649 | 3' | -55.8 | NC_004156.1 | + | 53613 | 0.67 | 0.924907 |
Target: 5'- aCGGUGCcucggcuuuuacuGGCACUGGUGgUGGUGCUg -3' miRNA: 3'- -GCCACGu------------UCGUGGUCACgGUCAUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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