miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16649	3'	-55.8	NC_004156.1	+	22584	0.7	0.806391
	Target:  5'- uCGGUGCucgGAGC-UCGGUGCuCGGUGCUu -3' miRNA:   3'- -GCCACG---UUCGuGGUCACG-GUCAUGGu -5'
16649	3'	-55.8	NC_004156.1	+	68228	0.7	0.806391
	Target:  5'- --cUGCGAGuCugCAGUGCUGGUACUg -3' miRNA:   3'- gccACGUUC-GugGUCACGGUCAUGGu -5'
16649	3'	-55.8	NC_004156.1	+	49817	0.73	0.622778
	Target:  5'- ---aGC-AGUAUCAGUGCUAGUACCAg -3' miRNA:   3'- gccaCGuUCGUGGUCACGGUCAUGGU- -5'
16649	3'	-55.8	NC_004156.1	+	206314	0.76	0.485207
	Target:  5'- ---aGCAccGGUACCAGUGCCGGUACUc -3' miRNA:   3'- gccaCGU--UCGUGGUCACGGUCAUGGu -5'
16649	3'	-55.8	NC_004156.1	+	68513	0.77	0.439473
	Target:  5'- aCGGUGCAucaaagAGCACUcagacuAGUGCCAgcaGUACCAg -3' miRNA:   3'- -GCCACGU------UCGUGG------UCACGGU---CAUGGU- -5'
16649	3'	-55.8	NC_004156.1	+	185930	0.88	0.099222
	Target:  5'- uGGUGCuagugcuaguaccAGUACCAGUGCCAGUGCCAg -3' miRNA:   3'- gCCACGu------------UCGUGGUCACGGUCAUGGU- -5'
16649	3'	-55.8	NC_004156.1	+	123056	1.09	0.004028
	Target:  5'- cCGGUGCAAGCACCAGUGCCAGUACCAg -3' miRNA:   3'- -GCCACGUUCGUGGUCACGGUCAUGGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home