miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1665 3' -58.2 NC_001347.2 + 192266 0.66 0.926359
Target:  5'- -gCGCGcCGggGAGAagaaccucuucccggGCCCCG-CGUUc -3'
miRNA:   3'- ggGCGCuGCuuCUCU---------------UGGGGCgGCAG- -5'
1665 3' -58.2 NC_001347.2 + 38070 0.66 0.924323
Target:  5'- gCCCGCG-CGcAGAaagugcGAcaGCUCCGCCGcCa -3'
miRNA:   3'- -GGGCGCuGCuUCU------CU--UGGGGCGGCaG- -5'
1665 3' -58.2 NC_001347.2 + 107923 0.66 0.919086
Target:  5'- gUCUGCGGCGAucucuaaacAGAGGACCCUGauaaUGg- -3'
miRNA:   3'- -GGGCGCUGCU---------UCUCUUGGGGCg---GCag -5'
1665 3' -58.2 NC_001347.2 + 106009 0.66 0.919086
Target:  5'- gCCCGaCGACG-AGAucGCgCgGCUGUCg -3'
miRNA:   3'- -GGGC-GCUGCuUCUcuUGgGgCGGCAG- -5'
1665 3' -58.2 NC_001347.2 + 180901 0.66 0.907974
Target:  5'- aCCGCGGUGAcguGGAGAGCCUgucgGCCGa- -3'
miRNA:   3'- gGGCGCUGCU---UCUCUUGGGg---CGGCag -5'
1665 3' -58.2 NC_001347.2 + 80766 0.66 0.907974
Target:  5'- gCgGCGugGAgGGAGaAACCcgaucacuaCCGCCGUUa -3'
miRNA:   3'- gGgCGCugCU-UCUC-UUGG---------GGCGGCAG- -5'
1665 3' -58.2 NC_001347.2 + 161651 0.67 0.902102
Target:  5'- aCCCGCGGCGuGGAc-GCgCCGUuggCGUCg -3'
miRNA:   3'- -GGGCGCUGCuUCUcuUGgGGCG---GCAG- -5'
1665 3' -58.2 NC_001347.2 + 102473 0.67 0.901503
Target:  5'- uCCCGCGcacggugaacgaaAUGAAGcAGGACUuuGUgGUCa -3'
miRNA:   3'- -GGGCGC-------------UGCUUC-UCUUGGggCGgCAG- -5'
1665 3' -58.2 NC_001347.2 + 80602 0.67 0.901503
Target:  5'- gUUGCGGCGAgccacgaaacgaaAGAGGAUCUCGCgGUa -3'
miRNA:   3'- gGGCGCUGCU-------------UCUCUUGGGGCGgCAg -5'
1665 3' -58.2 NC_001347.2 + 157121 0.67 0.896023
Target:  5'- aCCGCGACuGAuGAGuuccACCaggcucugCGCCGUCu -3'
miRNA:   3'- gGGCGCUG-CUuCUCu---UGGg-------GCGGCAG- -5'
1665 3' -58.2 NC_001347.2 + 188983 0.67 0.896023
Target:  5'- cUCCGaCGGCGccguugcccgGGGAuauGAACCCCGCCa-- -3'
miRNA:   3'- -GGGC-GCUGC----------UUCU---CUUGGGGCGGcag -5'
1665 3' -58.2 NC_001347.2 + 208781 0.67 0.883909
Target:  5'- gCCCGCGGucucggugaugagcCGAaacgAGAGGcucagccgcugcgccGCgCCGCCGUCc -3'
miRNA:   3'- -GGGCGCU--------------GCU----UCUCU---------------UGgGGCGGCAG- -5'
1665 3' -58.2 NC_001347.2 + 1977 0.67 0.883252
Target:  5'- aCgGCGGCGggGAcGACguCCCGCCa-- -3'
miRNA:   3'- gGgCGCUGCuuCUcUUG--GGGCGGcag -5'
1665 3' -58.2 NC_001347.2 + 131707 0.67 0.883252
Target:  5'- aUuuGagGACGAGGAGAcgacgaCCgGCCGUCg -3'
miRNA:   3'- -GggCg-CUGCUUCUCUug----GGgCGGCAG- -5'
1665 3' -58.2 NC_001347.2 + 111432 0.67 0.869687
Target:  5'- gCgGCGACGAGGAcucGGACaCCCaaGCCGg- -3'
miRNA:   3'- gGgCGCUGCUUCU---CUUG-GGG--CGGCag -5'
1665 3' -58.2 NC_001347.2 + 149562 0.68 0.855362
Target:  5'- -aCGaGACGggGGGAAacaCCGCCGUg -3'
miRNA:   3'- ggGCgCUGCuuCUCUUgg-GGCGGCAg -5'
1665 3' -58.2 NC_001347.2 + 190163 0.68 0.847927
Target:  5'- gCCgGC-AUGggGGGcGCCaaaaCGCCGUCg -3'
miRNA:   3'- -GGgCGcUGCuuCUCuUGGg---GCGGCAG- -5'
1665 3' -58.2 NC_001347.2 + 174012 0.68 0.840317
Target:  5'- uCCCGUGAUGGAGAaAACgCCGgCGg- -3'
miRNA:   3'- -GGGCGCUGCUUCUcUUGgGGCgGCag -5'
1665 3' -58.2 NC_001347.2 + 126015 0.68 0.840317
Target:  5'- aCUCGCGGCGGGuGGcGCCCgucuuCGCCGUg -3'
miRNA:   3'- -GGGCGCUGCUUcUCuUGGG-----GCGGCAg -5'
1665 3' -58.2 NC_001347.2 + 98098 0.68 0.840317
Target:  5'- gCUCGCGGCGAcguGGGuuCagaaCUGCCGUCa -3'
miRNA:   3'- -GGGCGCUGCUu--CUCuuGg---GGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.