miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1665 5' -45.7 NC_001347.2 + 79348 0.66 0.999999
Target:  5'- aGCACGGGCugcuggUCUCCaugGCcgaGUa -3'
miRNA:   3'- -CGUGCCCGuuua--AGAGGaaaUGaa-CG- -5'
1665 5' -45.7 NC_001347.2 + 100880 0.66 0.999999
Target:  5'- gGCGCGGcGCAGcgccggccAUUCUCCgggucGCgcUGCu -3'
miRNA:   3'- -CGUGCC-CGUU--------UAAGAGGaaa--UGa-ACG- -5'
1665 5' -45.7 NC_001347.2 + 30911 0.67 0.999997
Target:  5'- uGUGCGuGGCAAcUUCUCCgaUACg-GCc -3'
miRNA:   3'- -CGUGC-CCGUUuAAGAGGaaAUGaaCG- -5'
1665 5' -45.7 NC_001347.2 + 165639 0.67 0.999997
Target:  5'- -gGCGGGCAGcUUCUUUUgcaACUcGCg -3'
miRNA:   3'- cgUGCCCGUUuAAGAGGAaa-UGAaCG- -5'
1665 5' -45.7 NC_001347.2 + 95295 0.67 0.999996
Target:  5'- gGCGCGGGCcuga-CUCCUcgGCcUGg -3'
miRNA:   3'- -CGUGCCCGuuuaaGAGGAaaUGaACg -5'
1665 5' -45.7 NC_001347.2 + 74050 0.67 0.999991
Target:  5'- cGCAccCGGGUuuuUUCUCUUggucgaacccgGCUUGCg -3'
miRNA:   3'- -CGU--GCCCGuuuAAGAGGAaa---------UGAACG- -5'
1665 5' -45.7 NC_001347.2 + 158588 0.68 0.999988
Target:  5'- cGCACGGGCAcgg---CCU--GCUgUGCg -3'
miRNA:   3'- -CGUGCCCGUuuaagaGGAaaUGA-ACG- -5'
1665 5' -45.7 NC_001347.2 + 52784 0.68 0.999983
Target:  5'- cGCAUGGGguAugaaaugacGUUUggaaCCUgUGCUUGCa -3'
miRNA:   3'- -CGUGCCCguU---------UAAGa---GGAaAUGAACG- -5'
1665 5' -45.7 NC_001347.2 + 99074 0.68 0.999976
Target:  5'- -gACGGuGCAAGcgggCUCCUUaaaggugUGCUUGUa -3'
miRNA:   3'- cgUGCC-CGUUUaa--GAGGAA-------AUGAACG- -5'
1665 5' -45.7 NC_001347.2 + 126447 0.68 0.999968
Target:  5'- cCAUGGGCGAGUUCgcgcgUCUgcUACUggGCu -3'
miRNA:   3'- cGUGCCCGUUUAAGa----GGAa-AUGAa-CG- -5'
1665 5' -45.7 NC_001347.2 + 170337 0.71 0.999454
Target:  5'- aCugGGGCAAGUUUcgCUUUUGCg-GCg -3'
miRNA:   3'- cGugCCCGUUUAAGa-GGAAAUGaaCG- -5'
1665 5' -45.7 NC_001347.2 + 142487 0.72 0.99739
Target:  5'- uCGCGGGCAA---CUCCaUUUGCUUcgGCg -3'
miRNA:   3'- cGUGCCCGUUuaaGAGG-AAAUGAA--CG- -5'
1665 5' -45.7 NC_001347.2 + 194679 0.72 0.99739
Target:  5'- gGCACGGGCAcg----CCUUUGCguaccUGCc -3'
miRNA:   3'- -CGUGCCCGUuuaagaGGAAAUGa----ACG- -5'
1665 5' -45.7 NC_001347.2 + 2511 0.75 0.982934
Target:  5'- cGCACGGGCAGuuggCUUUUUUGCUa-- -3'
miRNA:   3'- -CGUGCCCGUUuaa-GAGGAAAUGAacg -5'
1665 5' -45.7 NC_001347.2 + 104532 0.76 0.975995
Target:  5'- cGCGCGGGCGugc-CUCCUgcaUGCUgGCc -3'
miRNA:   3'- -CGUGCCCGUuuaaGAGGAa--AUGAaCG- -5'
1665 5' -45.7 NC_001347.2 + 185150 0.76 0.969108
Target:  5'- gGCACGGGCAAGUgcuucagcagcagCUUCUU--CUUGCc -3'
miRNA:   3'- -CGUGCCCGUUUAa------------GAGGAAauGAACG- -5'
1665 5' -45.7 NC_001347.2 + 114124 1.18 0.013668
Target:  5'- cGCACGGGCAAAUUCUCCUUUACUUGCg -3'
miRNA:   3'- -CGUGCCCGUUUAAGAGGAAAUGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.