miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16654 3' -47.8 NC_004156.1 + 212608 0.66 0.999947
Target:  5'- -cAUGuGUGUGCGAuAAgGUAGAGGUg -3'
miRNA:   3'- acUAC-UACGCGCUuUUgCGUUUCCAg -5'
16654 3' -47.8 NC_004156.1 + 114492 0.66 0.999947
Target:  5'- cGAucUGGUGCagacuGCGGAcAAgGCAAAGGUg -3'
miRNA:   3'- aCU--ACUACG-----CGCUU-UUgCGUUUCCAg -5'
16654 3' -47.8 NC_004156.1 + 164814 0.66 0.999944
Target:  5'- uUGAUGcAUGCGUauauaguuuACGCAGAGG-Ca -3'
miRNA:   3'- -ACUAC-UACGCGcuuu-----UGCGUUUCCaG- -5'
16654 3' -47.8 NC_004156.1 + 50065 0.66 0.99993
Target:  5'- ---gGGUGCGCaGAAAaaggcAUGCAAAGGa- -3'
miRNA:   3'- acuaCUACGCG-CUUU-----UGCGUUUCCag -5'
16654 3' -47.8 NC_004156.1 + 136357 0.66 0.99988
Target:  5'- uUGAUGGUGC-CcAAGugGCGuuGGUUg -3'
miRNA:   3'- -ACUACUACGcGcUUUugCGUuuCCAG- -5'
16654 3' -47.8 NC_004156.1 + 3262 0.67 0.999844
Target:  5'- aGAUGGUGCaGUGuuGGAUuCAGAGGUUg -3'
miRNA:   3'- aCUACUACG-CGCu-UUUGcGUUUCCAG- -5'
16654 3' -47.8 NC_004156.1 + 135074 0.67 0.999726
Target:  5'- uUGAUGAUGUGUGu--ACGUcguguucuuguuagAAAGGUUu -3'
miRNA:   3'- -ACUACUACGCGCuuuUGCG--------------UUUCCAG- -5'
16654 3' -47.8 NC_004156.1 + 186312 0.67 0.999566
Target:  5'- gUGAUGGagguuuUGCGCGAGucuagccgcaaacuGucACGCAAAGGa- -3'
miRNA:   3'- -ACUACU------ACGCGCUU--------------U--UGCGUUUCCag -5'
16654 3' -47.8 NC_004156.1 + 111006 0.68 0.999223
Target:  5'- aGAuUGAUuccagcaaaGUGUuGGAACGCGAGGGUCa -3'
miRNA:   3'- aCU-ACUA---------CGCGcUUUUGCGUUUCCAG- -5'
16654 3' -47.8 NC_004156.1 + 190677 0.68 0.999047
Target:  5'- uUGGUcGAUGCccaauCGAGGACGUAGAcucGGUCg -3'
miRNA:   3'- -ACUA-CUACGc----GCUUUUGCGUUU---CCAG- -5'
16654 3' -47.8 NC_004156.1 + 63044 0.7 0.996586
Target:  5'- ---aGcgGUGCcaaAAAGCGCAAGGGUCu -3'
miRNA:   3'- acuaCuaCGCGc--UUUUGCGUUUCCAG- -5'
16654 3' -47.8 NC_004156.1 + 86513 0.71 0.990321
Target:  5'- aGGUGGUGUGCuacGACGaCGAAGGUa -3'
miRNA:   3'- aCUACUACGCGcuuUUGC-GUUUCCAg -5'
16654 3' -47.8 NC_004156.1 + 175668 1.12 0.016251
Target:  5'- uUGAUGAUGCGCGAAAACGCAAAGGUCg -3'
miRNA:   3'- -ACUACUACGCGCUUUUGCGUUUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.